Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 111 / 1e-29 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 70 / 1e-14 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030032 [exp] 148 / 4e-43 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 145 / 9e-42 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 141 / 2e-40 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 127 / 3e-35 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 115 / 7e-31 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035294 [exp] 103 / 1e-29 AT4G15440 98 / 4e-26 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 110 / 1e-28 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10018791 [exp] 74 / 5e-16 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10032739 [exp] 73 / 2e-15 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 120 / 9e-33 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.002G130700 [exp] 63 / 3e-12 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 54 / 4e-09 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 54 / 5e-09 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 52 / 3e-08 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 50 / 2e-07 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 42 / 4e-05 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035290 pacid=23170523 polypeptide=Lus10035290 locus=Lus10035290.g ID=Lus10035290.BGIv1.0 annot-version=v1.0 ATGGCGGGTCGACCTAACTTTCGCCTCATTCAAACAAATGCCGTTGATTCGGTCATTTGTTTACGAGACTCTTCGGCACGAAGCGCCGATCCCAAACCAA TTTGCCCGGGCCAGAAAGGATTTCAAGCCCAACTCAAGCGAGGCATCGTACGAGATCAAGAAGGGCGAGCTATTGTACGGTACCAGCCGTTGGTGATGCG GGACCCTACGGTTTTTGATGACCCAGATAGCTTCAAACCTGACAAGTTCCTGGGCGAGAAGGGGGTGGAGTTGCTGAATTTCTTGTACTGGTCGAAAGGG CCAGAGACCGGTTCGACCAGCGAGTCAAATAAACAGTGTGCGAGGAAAGAGCACGTGACAGTAACTGGGTCGTTGTTTGTGGCACACTTCCTTCAACGGT ATGATTCCATCAGTGGAGAAGGTTCGACGATCAAGGCCGTTGAAAGGGCCAAGTGA
AA sequence Show only first row Show all	>Lus10035290 pacid=23170523 polypeptide=Lus10035290 locus=Lus10035290.g ID=Lus10035290.BGIv1.0 annot-version=v1.0 MAGRPNFRLIQTNAVDSVICLRDSSARSADPKPICPGQKGFQAQLKRGIVRDQEGRAIVRYQPLVMRDPTVFDDPDSFKPDKFLGEKGVELLNFLYWSKG PETGSTSESNKQCARKEHVTVTGSLFVAHFLQRYDSISGEGSTIKAVERAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035290 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	16.2	0.8768
AT2G20210			RNI-like superfamily protein (...		Lus10022840 [exp]	71.4	0.8435
AT4G39830			Cupredoxin superfamily protein...		Lus10036957 [exp]	100.7	0.8157
AT1G05577			Domain of unknown function (DU...		Lus10003921 [exp]	105.3	0.8287
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10010630 [exp]	169.0	0.7956
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	178.5	0.7842
AT4G28940			Phosphorylase superfamily prot...		Lus10034939 [exp]	204.3	0.7824
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	212.0	0.8025

Compare expression of checked genes

Lus10035290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.