Gene [FLAX] | FIBexDB

Lus10035291 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G15440	169 / 2e-51		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)
AT5G42650	76 / 2e-16		CYP74A, AOS, DDE2	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10030032 [exp]	345 / 4e-119	AT4G15440	423 / 2e-146	hydroperoxide lyase 1 (.1)
Lus10035289 [exp]	298 / 2e-100	AT4G15440	443 / 2e-154	hydroperoxide lyase 1 (.1)
Lus10030033 [exp]	298 / 2e-100	AT4G15440	442 / 7e-154	hydroperoxide lyase 1 (.1)
Lus10030029 [exp]	254 / 4e-83	AT4G15440	481 / 3e-169	hydroperoxide lyase 1 (.1)
Lus10031540 [exp]	220 / 1e-69	AT4G15440	467 / 3e-163	hydroperoxide lyase 1 (.1)
Lus10035295 [exp]	191 / 1e-61	AT4G15440	253 / 4e-83	hydroperoxide lyase 1 (.1)
Lus10021015 [exp]	63 / 1e-11	AT5G42650	468 / 7e-162	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Lus10021019 [exp]	57 / 9e-10	AT5G42650	474 / 6e-164	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Lus10015138 [exp]	0 / 1	AT4G15440	378 / 2e-128	hydroperoxide lyase 1 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.014G155800 [exp]	177 / 1e-53	AT4G15440	507 / 6e-179	hydroperoxide lyase 1 (.1)
Potri.014G038700 [exp]	77 / 8e-17	AT5G42650	658 / 0.0	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Potri.002G130700 [exp]	76 / 3e-16	AT5G42650	693 / 0.0	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Potri.004G149000 [exp]	72 / 8e-15	AT5G42650	492 / 3e-171	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Potri.009G109700 [exp]	66 / 9e-13	AT5G42650	479 / 2e-166	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Potri.004G148900 [exp]	65 / 2e-12	AT5G42650	499 / 2e-174	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Potri.004G148600 [exp]	54 / 7e-09	AT5G42650	442 / 3e-152	DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)

PFAM info

Representative CDS sequence

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>Lus10035291 pacid=23170605 polypeptide=Lus10035291 locus=Lus10035291.g ID=Lus10035291.BGIv1.0 annot-version=v1.0

ATGCTGGACATCTTGAAACGTGGTACCAAGGTGTGGACTACGGAGCTGAAAGTCAACCTAGACGAGATGTGGACCACTCTCGAAAAAGGCATCTCATCCA

AAGGAAGTGCCACGTTGTTCTCGCCACTTCAGCACTGTATGCTCAAGCTGCTAATCAAAACCTACGTGGGAGCTGACATGGCCGAAACAGCCCCGAAACT

CCTGAAGTCCGGTCCCACCGTTATCAACGCGTGGTTCGCCCTCCAGATCCACGCGACGACCCCCATCAACGTTTGCCAACCTCTCGTAGAGATTTTCCTC

CACCTGTTCCGGTACCCATCTTTCCTCATCCAACCCAAATACAACAAACTCGCCAGTTTCATCAAAACTCATGGACATGACGTGGTGCAACGTGGGTTGA

TCGAGTACGGACTCACCGAGGAAGAAGCGATTCACAAATTGCTATTCGTTCTCGCCTTCAACTCGTTTGAAGGATTTACCATCTTTATACCCAAGCTATT

GGCCCGGTTACTCAATGACTCGACCGGGTTACAAGAAAAGCTCCGGGTTGAAGCCAGGTAG

AA sequence

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>Lus10035291 pacid=23170605 polypeptide=Lus10035291 locus=Lus10035291.g ID=Lus10035291.BGIv1.0 annot-version=v1.0

MLDILKRGTKVWTTELKVNLDEMWTTLEKGISSKGSATLFSPLQHCMLKLLIKTYVGADMAETAPKLLKSGPTVINAWFALQIHATTPINVCQPLVEIFL

HLFRYPSFLIQPKYNKLASFIKTHGHDVVQRGLIEYGLTEEEAIHKLLFVLAFNSFEGFTIFIPKLLARLLNDSTGLQEKLRVEAR

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035291 [exp]	0	1

Lus10035291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.