Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34080 86 / 4e-20 Cysteine proteinases superfamily protein (.1) AT3G49340 82 / 2e-18 Cysteine proteinases superfamily protein (.1) AT3G48340 80 / 7e-18 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G45890 79 / 2e-17 SAG12 senescence-associated gene 12 (.1) AT3G48350 79 / 2e-17 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G11310 76 / 2e-16 RD21A, RD21 Papain family cysteine protease (.1) AT4G11320 76 / 2e-16 Papain family cysteine protease (.1) AT1G29080 74 / 7e-16 Papain family cysteine protease (.1) AT4G36880 74 / 1e-15 CP1 cysteine proteinase1 (.1) AT3G19390 74 / 1e-15 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028501 [exp] 101 / 1e-25 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028502 [exp] 101 / 1e-25 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10026073 [exp] 100 / 3e-25 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10029799 [exp] 100 / 3e-25 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10003275 [exp] 100 / 3e-25 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020722 [exp] 99 / 1e-24 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10004781 [exp] 98 / 1e-24 AT5G45890 227 / 7e-73 senescence-associated gene 12 (.1) Lus10020730 [exp] 98 / 2e-24 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 97 / 3e-24 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118200 [exp] 93 / 1e-22 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 91 / 5e-22 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 91 / 8e-22 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.013G118400 [exp] 90 / 2e-21 AT5G45890 378 / 2e-131 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 87 / 1e-20 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.004G056050 [exp] 82 / 1e-19 AT5G45890 263 / 3e-88 senescence-associated gene 12 (.1) Potri.004G056308 [exp] 82 / 2e-19 AT5G45890 254 / 7e-85 senescence-associated gene 12 (.1) Potri.004G056301 [exp] 82 / 2e-19 AT5G45890 254 / 7e-85 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 84 / 4e-19 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 84 / 4e-19 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10035292 pacid=23170626 polypeptide=Lus10035292 locus=Lus10035292.g ID=Lus10035292.BGIv1.0 annot-version=v1.0 ATGCGGAAGTTGTTGGGCATTTTCTGCCGTGGCGGCCGTGGAAGGGATATACCAGATAACTACAGGGAAGTTAGTGCCCCTTTCGGTGCAACAATTGGTC TACTACGACACCAAGGGAATCACCGGAGGATGCGACTATGGATTCACGGTAGCTGCGTTCGATTTCATCTTAAGAAACCAAGGTCTTACGACCGAATCGA ACTACCCTTACAGGGGTGCAGCAAGGCGGAATTAGCGGGGCAAATCAACGGCTTCGAGATTGTGCCGGCCAATGACGAAGTTGCCTTGCTCAAGGCCGTG GCCACCCAGCCGGTTTCGGTGTCCAGTCACGCTAATGTGTCCTGGTTCTACGATTACCGCAGTGGGATCATTTCGGGTGAGTGTGGGACTGATGTGGAGC ATGGGGTGACGGAGGTGGGGTATGGGGGGTATGGGGAGAGCGAAGGGAAGAAGTACTGGCTGATGAAGACCTCGTGGGGAGAGCGAGGTTACTTTTGGAT GGAGAGAGATGTGGCGGCGAAAGAAGGGATGCGTGGGATTTGTCAGTATGCTTCCTACATTACTATGTCGCGGACATAA
AA sequence Show only first row Show all	>Lus10035292 pacid=23170626 polypeptide=Lus10035292 locus=Lus10035292.g ID=Lus10035292.BGIv1.0 annot-version=v1.0 MRKLLGIFCRGGRGRDIPDNYREVSAPFGATIGLLRHQGNHRRMRLWIHGSCVRFHLKKPRSYDRIELPLQGCSKAELAGQINGFEIVPANDEVALLKAV ATQPVSVSSHANVSWFYDYRSGIISGECGTDVEHGVTEVGYGGYGESEGKKYWLMKTSWGERGYFWMERDVAAKEGMRGICQYASYITMSRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34080			Cysteine proteinases superfami...		Lus10035292 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	5.0	0.9592
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	7.1	0.9592
AT1G04670			unknown protein		Lus10004041 [exp]	8.7	0.9592
					Lus10040397 [exp]	10.0	0.9592
					Lus10006918 [exp]	11.2	0.9592
					Lus10007508 [exp]	12.2	0.9592
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	13.2	0.9592
					Lus10027066 [exp]	14.1	0.9592
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	15.0	0.9592
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	15.8	0.9573

Compare expression of checked genes

Lus10035292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.