Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 224 / 3e-74 RmlC-like cupins superfamily protein (.1.2.3) AT5G39130 224 / 4e-74 RmlC-like cupins superfamily protein (.1) AT5G39190 223 / 5e-74 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39110 221 / 4e-73 RmlC-like cupins superfamily protein (.1) AT5G39150 220 / 1e-72 RmlC-like cupins superfamily protein (.1) AT5G39120 219 / 1e-72 RmlC-like cupins superfamily protein (.1) AT3G05950 219 / 2e-72 RmlC-like cupins superfamily protein (.1) AT5G39180 219 / 3e-72 RmlC-like cupins superfamily protein (.1) AT5G38940 209 / 3e-68 RmlC-like cupins superfamily protein (.1) AT3G04200 205 / 9e-67 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032015 [exp] 291 / 1e-100 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10032016 [exp] 290 / 3e-100 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 290 / 3e-100 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 288 / 1e-99 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035278 [exp] 285 / 2e-98 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 288 / 5e-98 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 280 / 2e-96 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10034254 [exp] 279 / 5e-96 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030048 [exp] 278 / 2e-95 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163200 [exp] 268 / 6e-92 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 268 / 7e-92 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 266 / 6e-91 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163300 [exp] 263 / 7e-90 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 263 / 8e-90 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G162200 [exp] 261 / 5e-89 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G465100 [exp] 254 / 2e-86 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G464100 [exp] 246 / 4e-83 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 244 / 4e-82 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 239 / 4e-80 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10035293 pacid=23170544 polypeptide=Lus10035293 locus=Lus10035293.g ID=Lus10035293.BGIv1.0 annot-version=v1.0 ATGGCATCTCAAATCATTCTCTTGACCTTGATATCCCTCATTACATACCCACATCTCATATCCCCCATGGATCAACCCCCACCACCTCAAGACTTTTGTG TGGCGGATTTCGACGGCCCTCTGACGACCAACGGTTTCGCTTGTAAGAATCCTGCAAACGTTGACGCTAACGACTTCTTCTCCAGTGGTCTCCGACTCCC TGGAAACACGTCGAACCCGGTCGGCTCCAAGGTGACTCCGACCTTTGTCACCCAGCTCCCTGGCCTCAACGGTCTGGGAATTTCAATGGTAAGGGTGGAC TATGCTCCGTGGGGGCTCAACCCGCCACATGTCCACCCTCGAGCCACCGAGGTACTGACGGTCATCAAAGGAACGTTGGAGGTTGGGTTCGTGACGTCCA ACCCTGAGAACCGTCTGATCACTAGGATAATCAACAAGGGCGACGTGTTTGTTTTTCCGATCGGTTTGGTCCACTTCCAGCGAAACGTTGGTCATGGACG TGCTATGGCCATTTCCGGGTTGAGTAGCCCGAACCCGGGGATCGTGAGGATGGCCGAATCTGTGCTCGGGTCGAACCCTAAGATTTCAACGGACATTCTT GCTAAGGCCTTTCAGTCCAACGAGGATGTGATGAAACAACTCCAATCTAAGTTTGTTTTGAAAACTAGCTAG
AA sequence Show only first row Show all	>Lus10035293 pacid=23170544 polypeptide=Lus10035293 locus=Lus10035293.g ID=Lus10035293.BGIv1.0 annot-version=v1.0 MASQIILLTLISLITYPHLISPMDQPPPPQDFCVADFDGPLTTNGFACKNPANVDANDFFSSGLRLPGNTSNPVGSKVTPTFVTQLPGLNGLGISMVRVD YAPWGLNPPHVHPRATEVLTVIKGTLEVGFVTSNPENRLITRIINKGDVFVFPIGLVHFQRNVGHGRAMAISGLSSPNPGIVRMAESVLGSNPKISTDIL AKAFQSNEDVMKQLQSKFVLKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39110			RmlC-like cupins superfamily p...		Lus10035293 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	3.9	0.8292
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	5.0	0.8179
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	5.1	0.8374
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	13.7	0.8297
					Lus10041755 [exp]	17.5	0.7675
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	26.3	0.7464
AT3G19920			unknown protein		Lus10017384 [exp]	26.9	0.7722
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	30.6	0.7986
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	32.2	0.7963
AT1G48820			Terpenoid cyclases/Protein pre...		Lus10008613 [exp]	32.5	0.7688

Compare expression of checked genes

Lus10035293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.