Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15440 253 / 4e-83 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT5G42650 130 / 1e-34 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT2G42850 54 / 4e-08 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT3G20120 42 / 0.0002 CYP705A21 "cytochrome P450, family 705, subfamily A, polypeptide 21", cytochrome P450, family 705, subfamily A, polypeptide 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030029 [exp] 414 / 8e-145 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10031540 [exp] 328 / 1e-110 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 315 / 7e-106 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 312 / 5e-105 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 312 / 6e-105 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 281 / 1e-92 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1) Lus10035291 [exp] 191 / 3e-61 AT4G15440 169 / 2e-51 hydroperoxide lyase 1 (.1) Lus10032739 [exp] 140 / 2e-38 AT5G42650 496 / 8e-173 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 129 / 2e-34 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155800 [exp] 280 / 4e-92 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.009G109700 [exp] 148 / 2e-41 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 135 / 1e-36 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 133 / 4e-36 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 129 / 3e-34 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G130700 [exp] 123 / 4e-32 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 112 / 2e-28 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.002G060700 [exp] 45 / 4e-05 AT2G42850 582 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.001G270800 [exp] 43 / 0.0002 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.011G001500 [exp] 42 / 0.0003 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035295 pacid=23170638 polypeptide=Lus10035295 locus=Lus10035295.g ID=Lus10035295.BGIv1.0 annot-version=v1.0 ATGTGGACCAATCTCGAATCAGGAATCTCCACCAAGGGGAGTGCCAACTACTTACTGCCACTTCAGCATTGCTTGCTCAAGTTCCGGACCAAATCACTCA TCGGAGCCGGCGTTTCCAAGTCTCCCGACATCGCCAAGTCGGGTCCCGCCATCATCGATGCCTGGCTGGCACTACAGCTCCTCTCTACGGTGGCCATCAA CGTCGTCCAGCCCCTGGAAGAGATTTTCCTCCTCTCCTTTAGCTACCCTTCTTTCCTCGTCCGGTGGGGGTACGACAAGCTCGCTAACTTCGTCAGAGCT CAAGGTAAGTCTGACATCTCGATCGGTAAATGTTACGTATCTGATTGTAGCAATGACAAGCTAATGGTGCAACTCGGTATGATTCAGTATGGACTCAGCG AGGAAGAATCGGTTCACAACTTGCTCTTCATCCTAGGCTTCAATGCCTTTGGAAAATTTTCCATCTTTCTACCCTCCCTATTCGGCCGGTTACTTACCGA CTCAACCGGTTTGCAACAAAAGCTTCTAGTCGAGGCTAGACAAGGCGGGAAATCGGACCTGACTTTCGAATCGATCAAGAAAATACCGTTAACACAATCA TTCGTCTATGAGACCTTAAGGCTCAGCCCCCCGGTTCCTAATCAGTTCGCCAGAGCCAGGAAGGACATTAAACTGAGCTCGTACGAGGCCTCTTATGAGA TCAAGAAGGGAGAGATGTGCGGGTATCAACCGCTAGTGATGCGTGATCCAATAGTTTTTGAAGATCCGTAG
AA sequence Show only first row Show all	>Lus10035295 pacid=23170638 polypeptide=Lus10035295 locus=Lus10035295.g ID=Lus10035295.BGIv1.0 annot-version=v1.0 MWTNLESGISTKGSANYLLPLQHCLLKFRTKSLIGAGVSKSPDIAKSGPAIIDAWLALQLLSTVAINVVQPLEEIFLLSFSYPSFLVRWGYDKLANFVRA QGKSDISIGKCYVSDCSNDKLMVQLGMIQYGLSEEESVHNLLFILGFNAFGKFSIFLPSLFGRLLTDSTGLQQKLLVEARQGGKSDLTFESIKKIPLTQS FVYETLRLSPPVPNQFARARKDIKLSSYEASYEIKKGEMCGYQPLVMRDPIVFEDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035295 [exp]	0	1

Compare expression of checked genes

Lus10035295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.