Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32590 612 / 0 EMB2795 EMBRYO DEFECTIVE 2795, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030028 [exp] 1095 / 0 AT2G32590 721 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein Lus10031539 [exp] 753 / 0 AT2G32590 659 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein Lus10015139 [exp] 59 / 5e-10 AT2G32590 48 / 5e-07 EMBRYO DEFECTIVE 2795, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155900 [exp] 700 / 0 AT2G32590 670 / 0.0 EMBRYO DEFECTIVE 2795, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05786 [flax] [poplar] Cnd2 Condensin complex subunit 2
Representative CDS sequence Show only first row Show all	>Lus10035296 pacid=23170635 polypeptide=Lus10035296 locus=Lus10035296.g ID=Lus10035296.BGIv1.0 annot-version=v1.0 ATGGGAGAAATTCTGAGCCCTAATCCGGCGATGAAGCAGAGGCTTCCTAGAATTCAGTCTCCGAAAAGCCCTTTCGTCTTGGGATCCAACAACGACCAGC TGGAGCGAGCCCAGGCTAGAGCTGCTCGCGCCGCCGCCGTACGCCGTAAGACGGTGGCTGGGGCCTGTCTTTTCCCCGCCTCCCCCGCCGTCCCCCGTAA CCCGGCGGCTGTCGCCGTCAGTTCCCAGCCTTCAGGTGGCGAATCAGCGGATCCTTCTTGCCTCGACAAGCAGCAGATCTTCGACCTATTCCACAATTGC ATCAAACTCGCCAGCGAAAATAAAATCAATCAGAAGAATACATGGGATTTGAACTTGATTGACCACTTGTATGACATCATTAAGGTGGAAGAAGAGGAAG AAGATTCAGAAACCAATTTCCAGAAGGCCAGTTGCACACTGGAAGCTGGGGTGAGAATCTACTCCTTAAGAGTGGATTCTGTGCATTCCGAGGCATACAA GGTTCTCGGTGGGATACATCGAGTGGGTCATGATAATGAACAAGTTGCTGCTTCTGGAGATGCAAATGATGATACTGGTGGACAAGAGGGCGATCAAGGG AAAAAGGAGACGGAGAAGAAGATCTCACCTTTGTCGACATTGGAACCATCTTTTGAGGCTCTTAATGTCAAGAAGCTTGATGTTGCATTTGCTGTTGATC CCCTTTATCATCAGACTTCTGCTCAGTTCGATGAAGGGGGAGCTAAGGGTCTTCTACTAAACAATCTTGGAGTTTATGGTGGATGTCGAGTGCTCTTTGA TTCGCAGGAAGTGCCGGGGAAGTGTTTCACATCTGAAAACCAGTGTGGCAGTGATCAGTCTGTTGACCTCTCTTTTGCCAAGGATTGCATTGAACAGATG GTTTTGAACATGCGAGCTAAGAATGAAATTTCACCAACCCTTGGTGAAATTATCAGCCGGTTTGATGAAAAGAACAAAAGACCATTAGATACATTTTCCC ACCAGAATACTGGCAACCAAGAGGATGTAAATGACAGTTATAACAACGAAGCTGAGTTTGCTGGTGATGCATTTGAGAATCAAGAGACTTGGGCTGCAGA GCATGACGATTGCCATAGTGCTATTAATGAGGACATGGATAATGCAGAAGCAAGCATTCCTAGTTATCACCAGGAAAATGAACCATATCCTTCCGACATC CCAGATATGGATGATAGGAACGACACGATTGATACATACTTGTTACGGAGTTTAGGTTTTGCATCCAAACATAACGCTTGGGCAGGACCTGATCATTGGA AGTACCAAAGAACCAAAGGTGCAGAGAATGTTCCCAATGGAGCAGAAGGTCCTGAAATAACAACCAAGAAATCAAAGACCAAGAAGCAAGCGGAACCTGA CATTGATTTTACAAAAGCCTTGGATGAAGAATTGCTAGACATCTTTTCTCCTCCGAAGAATCCCAAGTCACTTCTGCTACCAGCAAACAGGACAGCCTCC TCCTCCAACACAAAGTTACCAGAAGATTGCCACTATCAGCCAGAGGATCTTGTTAAACTCTTTCTTCTACCCAACGTCATGTGTATTCAGAAGCGAGGAA GAAGAACATCCAGAGGTAGTAGAGTTGCTATCATCTCCTTGAAAGGTCATTTCTCTTCCCCACCCATTCCTAAAATGTTAAAAGAAGAATCTTTTCTTTT TGCAGAAGACTCAGGACAGTTCGAAGACTACGAAGAAGCACAGCCGTCATGGGATGGTGATGACGATGCTGACTTCGACGGCGGCCAGTTTGAAGATATG AATGTGCCGAGCGATGCGGAGAGTCCAAATACTCTAGTTTCTCAGCCGCGGCAGGTTGCGAAAGTTGAAGTGGCCTACGATAAGAGGTCTAAGCAAGTTG ATGTCCAACGGCTGAAGGAAACTCTCTGGCGCCATATGCACGAATCTCCACAAACACCTGTACAGGAAAACAAGCAGGACGAAGAGGAAGAAGGAGAAGA AGAAGAGGGAGTAGTGTCATTCAAGAGGCTATTGGCAAGCTTTCCAAAGGAGTGCAATGCAGCTGCAAGCATCAACGACATCTCCCCTCATCTCTGCTTC ATATGCCTACTGCATTTGGCCAACGAGCATGGTCTAAGTATCCATGGCCGTTCTTCGTTGGACGATCTCGCCATCCATTTCCCTTCGCAGCTCGAACCCG AGGTATAG
AA sequence Show only first row Show all	>Lus10035296 pacid=23170635 polypeptide=Lus10035296 locus=Lus10035296.g ID=Lus10035296.BGIv1.0 annot-version=v1.0 MGEILSPNPAMKQRLPRIQSPKSPFVLGSNNDQLERAQARAARAAAVRRKTVAGACLFPASPAVPRNPAAVAVSSQPSGGESADPSCLDKQQIFDLFHNC IKLASENKINQKNTWDLNLIDHLYDIIKVEEEEEDSETNFQKASCTLEAGVRIYSLRVDSVHSEAYKVLGGIHRVGHDNEQVAASGDANDDTGGQEGDQG KKETEKKISPLSTLEPSFEALNVKKLDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCRVLFDSQEVPGKCFTSENQCGSDQSVDLSFAKDCIEQM VLNMRAKNEISPTLGEIISRFDEKNKRPLDTFSHQNTGNQEDVNDSYNNEAEFAGDAFENQETWAAEHDDCHSAINEDMDNAEASIPSYHQENEPYPSDI PDMDDRNDTIDTYLLRSLGFASKHNAWAGPDHWKYQRTKGAENVPNGAEGPEITTKKSKTKKQAEPDIDFTKALDEELLDIFSPPKNPKSLLLPANRTAS SSNTKLPEDCHYQPEDLVKLFLLPNVMCIQKRGRRTSRGSRVAIISLKGHFSSPPIPKMLKEESFLFAEDSGQFEDYEEAQPSWDGDDDADFDGGQFEDM NVPSDAESPNTLVSQPRQVAKVEVAYDKRSKQVDVQRLKETLWRHMHESPQTPVQENKQDEEEEGEEEEGVVSFKRLLASFPKECNAAASINDISPHLCF ICLLHLANEHGLSIHGRSSLDDLAIHFPSQLEPEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	0	1
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	2.0	0.9763
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	2.4	0.9732
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	4.0	0.9721
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	4.5	0.9744
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	5.5	0.9720
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	6.0	0.9718
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	6.9	0.9606
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	9.9	0.9674
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	10.6	0.9706
					Lus10027307 [exp]	10.8	0.9460

Compare expression of checked genes

Lus10035296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.