Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11940 359 / 2e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G62305 357 / 9e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G14550 339 / 2e-114 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G19160 176 / 6e-51 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 168 / 4e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT1G68390 165 / 6e-47 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 164 / 1e-46 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 164 / 1e-46 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G25870 160 / 2e-45 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 160 / 5e-45 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030027 [exp] 712 / 0 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020037 [exp] 345 / 1e-116 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10015553 [exp] 340 / 1e-114 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008770 [exp] 337 / 1e-113 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10022242 [exp] 336 / 2e-113 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10026959 [exp] 176 / 4e-51 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 169 / 2e-48 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 163 / 9e-46 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 162 / 1e-45 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009500 [exp] 413 / 1e-143 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 397 / 1e-136 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G348400 [exp] 334 / 1e-112 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.010G121800 [exp] 185 / 1e-54 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 177 / 9e-52 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 171 / 5e-49 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 170 / 9e-49 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 169 / 2e-48 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 167 / 1e-47 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 160 / 3e-45 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10035297 pacid=23170497 polypeptide=Lus10035297 locus=Lus10035297.g ID=Lus10035297.BGIv1.0 annot-version=v1.0 ATGACAGCAAAGAAGAAGCTTTCAAAGCTTAACCACCACAAGCAGCAGCAGTTTTCATGGTTTCTCTGCAAGATGCTCACCAATGTCTCCTTGTTCTTGT GCCTCATGCTCTACCTCCACAACCACCCCCACAGAAATCAATCTTCTTCCTTGACAGATCATGATCGTCACTCTTTCTCCCGTGATCATCGAACGTTCCA GGGGACCCCGAAGATCGCGTTCCTGTTCCTGGCTCGACGAACCATCCCTCTCGATTTCCTGTGGAACTACTTCTTCAGAAATGCTGATGCTGACAAATTC TCAGTCTATGTCCACTCGGAGCCAGGGTTTCTGCTCAATGAGACCACCACTGACTCTGCTTTCTTCCATGGTCGGCAGCTTAACCAGAGTGTTCAGGTAG TATGGGGCGAACCGACGATGATTCTAGCTGAAAGGCTGTTGCTTCAGGCTGCTCTTCAGGACCCTGCCAATCAGAGATTTGTTCTCCTCTCTGACAGCTG TATCCCTTTGTACAACTTCAGCTACACTTACAGCTACATAATGTCTTCTCCCAAGAGCTTTGTTGACAGCTTTGTTGACGAGTCGACTGGCCGCTACAAT CCTGACATGTCGACCACGATCCCCAGAAGTAAATGGCGGAAGGGATCTCAGTGGGTCACATTGGTCAGAAAACATGCCGATGTAGTTGTCGACGACAACT TCGTATACCCCCTCTTCAGGAAATACTGCAAGAGATGGAAAGCTCGGAGGAACTTGCCCCGAATCCTACGAATCCTCGATCTGCACTTTGTGTTTCAGCA TCAGAAACACTCAAACTGCATACCTGATGAACACTATGTCCAGACTTTGCTCACTATGAAAGAGCTTGAGCACGAGGTCGAAAGGAGGACACTCACCTAC ACACTGTGGGACAGTACCCCGGGAAAAGACTGGACACAGATGTGGCACCCGGTCACTTTCGACCAGCCCGATGCAGCCACCGACAAGATAAAAGAAATCA AGGGGATCGAGAACATACATTATGAGAGCGAGCACAGTACGGAGTGGTGCAAGGTGGCGAACATCTTTTCGTCCTGCTTCCTATTCGCGAGGAAGTTCAG CCAGGGAGCCGCGGTACGGCTCCTGAACGAGGATGCCGTTGCTTTGTTCGATCCCGAGGCTACATTGTTGTCCAATTCTGCTCCGTAG
AA sequence Show only first row Show all	>Lus10035297 pacid=23170497 polypeptide=Lus10035297 locus=Lus10035297.g ID=Lus10035297.BGIv1.0 annot-version=v1.0 MTAKKKLSKLNHHKQQQFSWFLCKMLTNVSLFLCLMLYLHNHPHRNQSSSLTDHDRHSFSRDHRTFQGTPKIAFLFLARRTIPLDFLWNYFFRNADADKF SVYVHSEPGFLLNETTTDSAFFHGRQLNQSVQVVWGEPTMILAERLLLQAALQDPANQRFVLLSDSCIPLYNFSYTYSYIMSSPKSFVDSFVDESTGRYN PDMSTTIPRSKWRKGSQWVTLVRKHADVVVDDNFVYPLFRKYCKRWKARRNLPRILRILDLHFVFQHQKHSNCIPDEHYVQTLLTMKELEHEVERRTLTY TLWDSTPGKDWTQMWHPVTFDQPDAATDKIKEIKGIENIHYESEHSTEWCKVANIFSSCFLFARKFSQGAAVRLLNEDAVALFDPEATLLSNSAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10035297 [exp]	0	1
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	6.1	1.0000
					Lus10024550 [exp]	8.6	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	10.5	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	15.5	1.0000
					Lus10010778 [exp]	16.4	1.0000
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	17.9	1.0000
					Lus10011061 [exp]	18.2	1.0000
					Lus10011759 [exp]	20.5	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	22.3	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	22.8	1.0000

Compare expression of checked genes

Lus10035297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.