Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19520 603 / 0 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G01970 184 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09680 113 / 5e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 107 / 7e-24 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G50280 103 / 2e-22 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 99 / 4e-21 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62930 98 / 7e-21 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32630 96 / 2e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G03560 96 / 3e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 95 / 5e-20 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030026 [exp] 1191 / 0 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10009299 [exp] 175 / 7e-49 AT1G01970 430 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001964 [exp] 109 / 6e-27 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018019 [exp] 114 / 5e-26 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042016 [exp] 105 / 2e-23 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023863 [exp] 103 / 1e-22 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042768 [exp] 103 / 2e-22 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 102 / 3e-22 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 101 / 5e-22 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228200 [exp] 698 / 0 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.002G034900 [exp] 338 / 1e-109 AT1G19520 296 / 2e-93 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.014G070500 [exp] 187 / 2e-52 AT1G01970 469 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G123600 [exp] 110 / 3e-25 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G105700 [exp] 109 / 1e-24 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G131400 [exp] 103 / 8e-23 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G037200 [exp] 103 / 8e-23 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G131600 [exp] 102 / 1e-22 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G276500 [exp] 101 / 4e-22 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 100 / 6e-22 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035298 pacid=23170548 polypeptide=Lus10035298 locus=Lus10035298.g ID=Lus10035298.BGIv1.0 annot-version=v1.0 ATGAATTTGAAGCAACTAGTCAATAGGCAGTCGGTCAAGAAGTTGTACGGAAGATACATGTCTCCATATTTGAGCAATGGGTTTAGGGATATCCCCACGG TGTCAGTGAATTCAGTCTCCCCAACGAGCACATATGAGGCAAAACCTAGTATGTTCATCAGTAGGTATCTCCATTCAGCTTCATCACAGTCCGAGTTAAA AAGCCAATTGAGTTCGAATCCAAAACTTGATTCCGGTGGTGATCTAGGGGATGATGGAGCAACGAATGAGTTCCTTTCTCGGTTTGCATGGATGATGAGA AAAAAGCTGTCCGAAGCTAACCCTGAATGTGATAGGCAGACTGTTGATAGTATGTTATTGATTATAGTTGAGAAAGTTGTGTTTGAGATGCGGAAAGGTA ATTCGGACCAGATGCTCGGAGGAGCTGCTGGGTCTTCTTCTGTGCCGTCGCAGGATTTTAGTGAGGATTTGTGGAGAACTGTGTGGGAAGTTAGTAATTC CGTGTTGGAGGATATGGAAAAGGAAAAGAAGAAGGAGAAAATGAAACGCTTCTTGCAAGACGAGGAGGTGAAAGAGATGTGTAGGTTTGCTGGTGAAATT GGTCTTCAGGGGGATATGCTGAGAGAGCTCAGATTTAAATGGGCTCGAGAGAAAATGGAGGAAGCTGATTTTTATGAGAGCTTGGAGCGACTTCGACAAG GGGAGAAAGAGGAAACAGCAGAAGTCACCCCTGCTGGCTTGATAGAGGGGGAGCAAGCTGTGATGAGTGAGGAGGAGCCTAAGGTTGTTGACCTTCCCAA GAGACATGGTACTATGAAGTACAAAATTTATGGGCTTGACCTCTCAGACCCCAAATGGGGTGAAGTTGCTAATAAACTACACGAGTCAGGAGAGCCGAAG CCAATATCAGGGAAATGCAGATTAGTAACTGAGAAAATCCTGTCTTTGAAACCGGAGGATGATCCTTCCTCACTGCTTGAGGAATGGAAAGAGCTTCTGG AGCCGGGAAAGGTTGATTGGGTTGCTTTGCTTGACCATCTGAAAGAACGGGATGCTAATTTATACCTTAAGGTAGCTGAACTTCTCTTGAAGGAGAGTTC TTTCCAGGCTAACATCCGCGATTACTCTATCCTAGTTGCTGCCCATGCTGAAGAGAACCATGTAGAAGATGCAGAAAGAATTCTCCAGAAGATGAATGAT AAAGGTATTGTGCCTGATATCTCGTCTGCCACAAGTTTGGTACACATGTACAGTAAGGCTGGTAATCTGGATAGGGCCAGACAGGCATTTGAGGATTTAA GGGCTCATGGGATTAGACCTGACGTCGCGGTGTACAACTCGATGATTATGGCTTATGTTAAAGCTGGGCAGCCTACAGTGGTTGAGTCGTCATTACTAAT GGAAATGGAAGGAAGCGGTCTCCACGTCTCTGAGGAAATATATATGGCTTTACTTGAATCATATGCTAAACTAGGTGATGCTAACTTAGCTGGACGAATG GTGAAAACAATGCAATGGAAAGGATTTAACCTTACACTTGAAAGTGGGGCGTTGCTTCTTGAGGCATATGCTCAAGCTGGTAGGCCTAATGATGCAAGGC AAAACTTTGACTACATGATGAAGATTGGACTCAAGCCCGACGATCGGTGTACTTCCAGCATGATTGCAGCCTACAAGGAGAAGAATTTACTGGATAAGGC CTTAAGCCTTTTGTTGGAGCTCGAGAGTAAAGGTTTTGAGCCAGGGCTTGCTACTTATACCGTTCTTATTGATTGGTTTGGTAAGATGGGCATGATTGAT GAGGTTGAGCAGCTAGTGAGGAAAATTGCAGAGTTGGGTGAGGTGCCTCCTTTGAAGATTCAAGTAATCCTTTGTGATGTTTATGCCAGAGCTAATATGG AAAAGAAAGCGCTTCAGGCTTTAGGTGTTTTGGAAGCTAAGAAAGAGCAACTCGGAGCAGACGACTTTGCGAGAGTTATAATTGGTCTTCATGCTGGGAA ATTTGCAGAAGAGGCCAAGAAGATGAATGCGCTGATGCTCGCGCAGGGCCATGTTGAATCGGATAAGCTTAAGATGGAAATCTTTAAGAGCACCGCTTTT CCAAAGTCTTCCGTCCGGAGGACATAG
AA sequence Show only first row Show all	>Lus10035298 pacid=23170548 polypeptide=Lus10035298 locus=Lus10035298.g ID=Lus10035298.BGIv1.0 annot-version=v1.0 MNLKQLVNRQSVKKLYGRYMSPYLSNGFRDIPTVSVNSVSPTSTYEAKPSMFISRYLHSASSQSELKSQLSSNPKLDSGGDLGDDGATNEFLSRFAWMMR KKLSEANPECDRQTVDSMLLIIVEKVVFEMRKGNSDQMLGGAAGSSSVPSQDFSEDLWRTVWEVSNSVLEDMEKEKKKEKMKRFLQDEEVKEMCRFAGEI GLQGDMLRELRFKWAREKMEEADFYESLERLRQGEKEETAEVTPAGLIEGEQAVMSEEEPKVVDLPKRHGTMKYKIYGLDLSDPKWGEVANKLHESGEPK PISGKCRLVTEKILSLKPEDDPSSLLEEWKELLEPGKVDWVALLDHLKERDANLYLKVAELLLKESSFQANIRDYSILVAAHAEENHVEDAERILQKMND KGIVPDISSATSLVHMYSKAGNLDRARQAFEDLRAHGIRPDVAVYNSMIMAYVKAGQPTVVESSLLMEMEGSGLHVSEEIYMALLESYAKLGDANLAGRM VKTMQWKGFNLTLESGALLLEAYAQAGRPNDARQNFDYMMKIGLKPDDRCTSSMIAAYKEKNLLDKALSLLLELESKGFEPGLATYTVLIDWFGKMGMID EVEQLVRKIAELGEVPPLKIQVILCDVYARANMEKKALQALGVLEAKKEQLGADDFARVIIGLHAGKFAEEAKKMNALMLAQGHVESDKLKMEIFKSTAF PKSSVRRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	0	1
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	2.0	0.9619
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	4.0	0.9472
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	5.5	0.9502
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	5.9	0.9394
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	7.5	0.9320
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	7.9	0.9519
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	9.5	0.9054
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	11.2	0.9260
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	13.6	0.9335
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	14.5	0.9283

Compare expression of checked genes

Lus10035298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.