Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21610 226 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT1G67600 181 / 7e-59 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 177 / 7e-57 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G61770 111 / 7e-30 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT3G12685 76 / 3e-17 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030025 [exp] 239 / 2e-80 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 186 / 9e-61 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 185 / 5e-60 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10011373 [exp] 166 / 7e-53 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 165 / 3e-52 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10036984 [exp] 152 / 8e-48 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10030253 [exp] 115 / 4e-33 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 60 / 3e-12 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001841 [exp] 61 / 4e-11 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156000 [exp] 238 / 9e-81 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 231 / 3e-78 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.011G087100 [exp] 218 / 5e-73 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G056600 [exp] 177 / 3e-57 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.002G171300 [exp] 111 / 5e-30 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G176100 [exp] 66 / 4e-13 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10035299 pacid=23170640 polypeptide=Lus10035299 locus=Lus10035299.g ID=Lus10035299.BGIv1.0 annot-version=v1.0 ATGGACGAGGTGATGACCACCGCCGACGCGACATTGGGAAGAGCGGCGCTGAAAATGGTCAGGACGGCTTCATCGGCGATTCTCTCAACTCCGACGCCTC CGTCGTCTTCTCCTCCTTCGTCTCTGCTGCCTAGCAACCTCCCGCTGATCTCGGCCTTCCTCGCCTTCGCCCTCGCCCAGTTCCTCAAGCTCTTCACCAA TTGGTTTAAGGAGAAGAGATGGGATTCCAAGAGGATGGTGGACTCCGGGGGGATGCCGTCTTCGCATTCCGCAACAGTGACAGCTCTCGCTATGGCTATT GGATTGCAGGAAGGGACTGGATCCCCTGCTTTCGCCATTGCTGTTGTCCTTGCTTGTGTTGTTATGTATGATGCATCTGGGATCAGACTTCATGCTGGTC GTCAAGCTGAATTGCTGAACCAAATTATGTGCGAGTTTCCTCCAGAACACCCCTTATCCAGTGTGAGACCTTTGCGCGAGTTACTTGGACACACTCCATT CCAGGTCGTTGTCGGAGCAATGTTGGGATGCATAGTATCATACCTGATGAGAAACACCGACTAA
AA sequence Show only first row Show all	>Lus10035299 pacid=23170640 polypeptide=Lus10035299 locus=Lus10035299.g ID=Lus10035299.BGIv1.0 annot-version=v1.0 MDEVMTTADATLGRAALKMVRTASSAILSTPTPPSSSPPSSLLPSNLPLISAFLAFALAQFLKLFTNWFKEKRWDSKRMVDSGGMPSSHSATVTALAMAI GLQEGTGSPAFAIAVVLACVVMYDASGIRLHAGRQAELLNQIMCEFPPEHPLSSVRPLRELLGHTPFQVVVGAMLGCIVSYLMRNTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	0	1
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	3.2	0.8874
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	3.7	0.8825
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	4.5	0.8772
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	4.5	0.8733
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	6.5	0.8789
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	6.9	0.8625
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	10.4	0.8351
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	12.7	0.8597
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	13.1	0.8118
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	13.9	0.8552

Compare expression of checked genes

Lus10035299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.