Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1098 / 0 ERD (early-responsive to dehydration stress) family protein AT3G21620 1095 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 1057 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 1041 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 1036 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G62320 993 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 981 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 875 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 406 / 2e-131 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 361 / 5e-114 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030024 [exp] 1398 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10020032 [exp] 1067 / 0 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 1062 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 1008 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10028000 [exp] 1003 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 1001 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10024477 [exp] 996 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 895 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 392 / 1e-125 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156100 [exp] 1183 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1158 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 1094 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 1085 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1080 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1074 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 878 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 868 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 418 / 7e-136 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 404 / 1e-130 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10035300 pacid=23170516 polypeptide=Lus10035300 locus=Lus10035300.g ID=Lus10035300.BGIv1.0 annot-version=v1.0 ATGGCGACGATAAGTGACATAGGGGTATCGGCAGGGATAAACATACTGAGTGCATTTTTGTTCCTGATCATCTTCGCCGTGCTTAGAGTTCAGCCGTTTA ACGACAGGGTTTACTTCCCCAAATGGTACCTCAAGGGTTTAAGAGCTAGTCCAACTAGGTCAGGAGCATTCGTCGCCAAGTTTGTGAATTTGGACTTCAG ATCATACTTGAGGTTCCTCAATTGGATGCCTGAAGCTCTCCGGATGCCCGAGCCGGAGCTGATTGACCATGCCGGACTTGATTCTGCTGTCTATCTCAGG ATTTACTTGTTAGGGCTGAAGGTATTCACTCCGATCACGATTCTGGCAATTTCGATATTGGTGCCGGTTAATTGGACTAATAACACATTGGAGAAGAGTG ATTTGACTTACAGTGATCTGGATAAGCTGTCTATATCCAACATTCCACAAGGGTCACCTAGATTCTGGACTCATTTGGTGATGGCTTATACCTTCACTCT CTGGACATGCTTTATATTGAAGAGGGAGTATGCAACAGTGGCTTCAATGAGGCTGCATTTCCTCGCATCAGAACATCGCCGCCCTGATCAATTCACGGTA CTTGTTAAGAATGTGCCACCGGACCCTGATGAATCAGTTGGTGAACTTGTGGAGCATTTCTTCCTAGTTAACCATCCAGACCACTACCTCACTCATCAAG TTGTTTACAATGCTAACAAATTTTCGAGCTTAGTCGCGAAGAAGAAGAATCTGCAGAATTGGCTTGACTACTTCCAGATCAAACACTCAAGAAACCCTTC TAAGAAACCCACCACAAAGACTAGATTCCTTGGCTTATGTGGGGCGAGAGTGGACGCAATCGACTATTACACTTCCGAGATCGAAAAAATATCAGCAGAA ATGTCGGCGGAGAGGGAGAAGCTAGTGAGCAACCAGGATGTGATAATGCCGGCTGCATTTGTGTCGTTCAAAACTCGGTGGGCCGCTGCAACTTGTGCAC AGACTCAGCAGTCCAGGAATCCAACAGAATGGCTGACCGAATGGGCTCCGGAACCGAGGGATGTCTACTGGGACAACCTGGCAATACCGTACGTTTCGCT AGCGATCAGGAGGCTTATCATCGGCGTTGCTTTCTTCTTTCTCACGTTTTTCTTCATGATCCCGATCATGTTCGTCCAGTCCCTTGCAAACATCGAGGGG ATCGAGAAGGCTGTCCCGTTTCTCAAACCACTCATTGAAATGAAAGTTGTGAAATCAGTAATCCAAGGGTTCCTTCCTGGACTTGCTCTGAAGCTGTTCC TCATCTTCCTGCCATCGATCCTTATGATCATGTCGAAATTTGAAGGGTTAATCAGTTTGTCCACATTGGAGAGGAGATCGGCAACAAGATACTACATTTT CCAGTTCATCAATGTGTTCCTTGGCAGCATCATCACAGGAACCGCATTTCAGCAGCTGAAACAATTCATACACCAGTCTGCAACCGAGGTACCAAAGACG ATCGGATCATCAATCCCAATGAAGGCCACATTCTTCATAACCTACATAATGGTCGACGGCTGGGCCGGAGTAGCCGGTGAAATCCTGAGGCTAAAGCCCC TAATAATCTACCACCTCAAGAACTGGTTCCTAGTCAAAACTGAAAAGGACAGAGAAGAGGCAATGGATCCCGGAACAATCGGATTCAACACAGGCGAACC GCAAATCCAGCTCTACTTTCTCCTCGGCCTAGTCTACGCAATAGTCTCCCCAATCCTCCTCCCCTTTATCCTCCTCTTCTTCGCCTTAGCCTACATAGTC TACCGCCACCAGATCATCAACGTGTACAGCCAAGAATACGAATCCGGAGCAGCGTTCTGGCCAGATGTCCACGGACGAATCATAGCAGCACTCGTCGTCT CGCAGTTTCTTCTCATGGGACTGATGAGCACCAAAGAAGCTGCTCAGTCGACGCCATTGTTGATCGCGCTTCCAGTTCTGACACTGTGGTTTAACCGGTT CTGCAAAGGGCGGTACGAGCCTGCGTTTGTTAAGTATCCGTTGCAGGAGGCGATGAGGAAGGATACGTTGGAGAGGGCGAAAGAGCCGGGTTTGAATTTG AAGAGCTTTTTGAACAGTGCTTATATACATCCTGCTTTCAAAGAGGTGGATGATGATGGAGTTGAAGATGAAGGGGAAGAGCTTGTGGTGACTAAGAGGG TTCAGAGCAAGCATAGTAGTAAACATAGTGCTTCTTCTTTGCCTGAAGATATGGAGCGTTCTTTGCTGTAA
AA sequence Show only first row Show all	>Lus10035300 pacid=23170516 polypeptide=Lus10035300 locus=Lus10035300.g ID=Lus10035300.BGIv1.0 annot-version=v1.0 MATISDIGVSAGINILSAFLFLIIFAVLRVQPFNDRVYFPKWYLKGLRASPTRSGAFVAKFVNLDFRSYLRFLNWMPEALRMPEPELIDHAGLDSAVYLR IYLLGLKVFTPITILAISILVPVNWTNNTLEKSDLTYSDLDKLSISNIPQGSPRFWTHLVMAYTFTLWTCFILKREYATVASMRLHFLASEHRRPDQFTV LVKNVPPDPDESVGELVEHFFLVNHPDHYLTHQVVYNANKFSSLVAKKKNLQNWLDYFQIKHSRNPSKKPTTKTRFLGLCGARVDAIDYYTSEIEKISAE MSAEREKLVSNQDVIMPAAFVSFKTRWAAATCAQTQQSRNPTEWLTEWAPEPRDVYWDNLAIPYVSLAIRRLIIGVAFFFLTFFFMIPIMFVQSLANIEG IEKAVPFLKPLIEMKVVKSVIQGFLPGLALKLFLIFLPSILMIMSKFEGLISLSTLERRSATRYYIFQFINVFLGSIITGTAFQQLKQFIHQSATEVPKT IGSSIPMKATFFITYIMVDGWAGVAGEILRLKPLIIYHLKNWFLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAIVSPILLPFILLFFALAYIV YRHQIINVYSQEYESGAAFWPDVHGRIIAALVVSQFLLMGLMSTKEAAQSTPLLIALPVLTLWFNRFCKGRYEPAFVKYPLQEAMRKDTLERAKEPGLNL KSFLNSAYIHPAFKEVDDDGVEDEGEELVVTKRVQSKHSSKHSASSLPEDMERSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	0	1
AT3G15550			unknown protein		Lus10025758 [exp]	1.0	0.9739
AT2G20590			Reticulon family protein (.1.2...		Lus10039890 [exp]	2.8	0.9716
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	3.5	0.9687
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	6.6	0.9592
AT2G20590			Reticulon family protein (.1.2...		Lus10002173 [exp]	7.2	0.9586
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	8.7	0.9666
AT5G48310			unknown protein		Lus10025189 [exp]	8.9	0.9633
AT5G48310			unknown protein		Lus10016071 [exp]	8.9	0.9620
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	8.9	0.9679
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	9.9	0.9642

Compare expression of checked genes

Lus10035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.