Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21630 577 / 0 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 277 / 1e-84 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G24540 241 / 2e-72 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G29990 240 / 5e-69 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G24550 234 / 2e-68 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G38560 233 / 1e-67 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 229 / 3e-66 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G68690 229 / 4e-66 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G23540 229 / 6e-66 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 224 / 2e-64 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030022 [exp] 657 / 0 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 650 / 0 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10004625 [exp] 288 / 7e-89 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 286 / 4e-88 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 282 / 3e-86 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 282 / 4e-86 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 259 / 5e-78 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10023645 [exp] 228 / 1e-65 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10034082 [exp] 227 / 3e-65 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226600 [exp] 649 / 0 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 626 / 0 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 598 / 0 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.008G187500 [exp] 293 / 3e-91 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 290 / 7e-90 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 290 / 7e-90 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 287 / 1e-88 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 285 / 2e-87 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 236 / 2e-69 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.017G110400 [exp] 227 / 4e-65 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035301 pacid=23170684 polypeptide=Lus10035301 locus=Lus10035301.g ID=Lus10035301.BGIv1.0 annot-version=v1.0 ATGAATCCAATCTTCTTCATCTCCAGCCTCATATTATCCCTCTCCACCGCAGCCACATCCCAATCAGCATCATGTCGCAAAACCTGCGACTTAGCCGTAG CTTCCTTCTTCATGTCGGAAGGCGCCAACCTCACCGGAATCCGAGAACTGATGCAATCCTCCGTCATAAACCCCGTCGAAGTGGGACCCTTAATGAGCTA CAACAAGCAGCTCTCTAACGGCGACATCATCCAATCCAACACCAGACTCAACGTCCCCTTTCCCTGCGACTGCCTCCCCGGCGCCGGCGCACTCGGCCAT GTTTTCCGGTACACCGCTGCGGCGGGAGACACGTACGATGTGATTGCTGGGAAGTATGCCAATTTGACCTCCGTTGATATGTTGCGGAGGTTTAATTCGT ATGGCTCTGACAATTTGACGGCTGGCTCTGTGGTCAACGTTACTGTGAACTGCTCGTGTGGGGACGTCGCCGTTTCGAGGGATTATGGGCTGTTCTTGAC TTATCCTTTGAGGGTGGAAGATAACTTGACCTCGGTTTCCTTTGAGGGTGGGAGAGATTTTCCGGCGGAGTTGATTCGGCGGTATAACGTTGGTGTGAAT TTCAGCCAGGGGAGTGGGTTGGTTTACATTCCTGTCCAAGATCCAAATGGAAGCTACAGGCCGTTGAGATCAAGCAAAGCAAGGAGTGGTCTTATTGCAG TGATCTCAATAGCATCAGCTACAGCTCTGCTGATGTTATTTGCAGGCATTGTATCCGCCAGATTCTACATGAGAAAGCGTAGGAGGGTGGTGATCAAGCC GGCTTCTCGAGCTCGAAACTCATCTGTTCCGAGAGGTGTCACTGTCGAGAAATCTGTCGAATTCTCGTACGAGGAGCTGGCTGATGCTACTGATAACTTC AGCTTGAGTAGGAAGATCGGTGAAGGCGGGTTTGGATGTGTTTACTACGCGGAGCTTCGAGGCCAGAAAACTGCAATCAAGAAGATGAAGATGGAAGCTT CGAAAGAGTTTCTGGCTGAGCTCAAGGTTCTGACCAATGTTCATCACCTAAGCTTGGTCAAGCTGATTGGATATTGTGTGAAGGGATCTCTGTTCTTGGT GTACGAATACGTGGAGAATGGAAACTTGTCTCAACATTTACACGGAAGGCAACCTTTGTCGTGGTCAGCAAGGTTGCAGATTGCTCTTGATTCGGCTAGA GGACTCGAGTACATCCATGAACACACGATTCCGGTCTACATCCACCGCGACATCAAGTCCGCCAACATCTTGATCGATAACAACTTGCGGGGAAAGGTTG CAGACTTTGGGTTGGCAAAACTAGCCAAGATTGAAGGCACACTAGTCCAGTCGCAGGTTCTCGTAGGCACATTCGGATACATGCCACCCGAATACGTTCG TTTAAAGACAGTATCTCCCAAAGTAGATGTGTACGCATTCGGAGTCATCCTTTACGAGCTAATCTCGGGGAAGGATGCCATCATCCAGCCAAACGGGACT TCCCAAATCGAAGCAACAACCCTCGTTGCACTGTTTGGGGAAGTTTTGAAGACCCAGCCTTGTGATGAACAAGAGTTGAGGAATTTGGTTGATACGAGAC TTGGTAACGAGTATCCGTTCGATTCAGTTCGAAAGATGGCCGAGCTAGGGAAGGCGTGTACGAGGGAGAAGCCGGAATCGCGGCCAAGTATGAGATCAGT TGTTATAGCCCTGACGGCCATTTCATCGGCTAGCCAAGCATGGAATCCTGAAACTTTCTATGGAAGAGGAGACTATGATGGTGTTAATTTCAGTGCTGTG GCTTCATGA
AA sequence Show only first row Show all	>Lus10035301 pacid=23170684 polypeptide=Lus10035301 locus=Lus10035301.g ID=Lus10035301.BGIv1.0 annot-version=v1.0 MNPIFFISSLILSLSTAATSQSASCRKTCDLAVASFFMSEGANLTGIRELMQSSVINPVEVGPLMSYNKQLSNGDIIQSNTRLNVPFPCDCLPGAGALGH VFRYTAAAGDTYDVIAGKYANLTSVDMLRRFNSYGSDNLTAGSVVNVTVNCSCGDVAVSRDYGLFLTYPLRVEDNLTSVSFEGGRDFPAELIRRYNVGVN FSQGSGLVYIPVQDPNGSYRPLRSSKARSGLIAVISIASATALLMLFAGIVSARFYMRKRRRVVIKPASRARNSSVPRGVTVEKSVEFSYEELADATDNF SLSRKIGEGGFGCVYYAELRGQKTAIKKMKMEASKEFLAELKVLTNVHHLSLVKLIGYCVKGSLFLVYEYVENGNLSQHLHGRQPLSWSARLQIALDSAR GLEYIHEHTIPVYIHRDIKSANILIDNNLRGKVADFGLAKLAKIEGTLVQSQVLVGTFGYMPPEYVRLKTVSPKVDVYAFGVILYELISGKDAIIQPNGT SQIEATTLVALFGEVLKTQPCDEQELRNLVDTRLGNEYPFDSVRKMAELGKACTREKPESRPSMRSVVIALTAISSASQAWNPETFYGRGDYDGVNFSAV AS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	1.4	0.9589
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	2.4	0.9490
AT1G18010			Major facilitator superfamily ...		Lus10006288 [exp]	5.0	0.9239
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	7.3	0.9496
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	7.5	0.9406
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	8.7	0.9485
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	13.1	0.9391
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	14.1	0.9286
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	14.7	0.9249
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	14.8	0.9374

Compare expression of checked genes

Lus10035301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.