Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17620 603 / 0 glycine-rich protein (.1.2.3) AT3G21630 474 / 2e-155 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 281 / 3e-82 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G24550 238 / 6e-67 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G38560 236 / 5e-66 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 227 / 2e-64 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70460 231 / 3e-64 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT4G32710 221 / 7e-64 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G52290 224 / 2e-63 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G10620 228 / 3e-63 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030022 [exp] 1048 / 0 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030023 [exp] 771 / 0 AT4G17620 571 / 0.0 glycine-rich protein (.1.2.3) Lus10035301 [exp] 638 / 0 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10026689 [exp] 283 / 5e-83 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 282 / 8e-83 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 274 / 2e-79 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 272 / 6e-79 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 251 / 7e-72 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10011098 [exp] 236 / 3e-66 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149900 [exp] 680 / 0 AT4G17620 613 / 0.0 glycine-rich protein (.1.2.3) Potri.002G226600 [exp] 624 / 0 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 582 / 0 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 559 / 0 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.001G190200 [exp] 288 / 1e-84 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 279 / 4e-82 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 275 / 2e-80 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 275 / 2e-80 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 271 / 3e-79 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.017G110400 [exp] 234 / 4e-65 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08652 [flax] [poplar] RAI1 RAI1 like PD-(D/E)XK nuclease CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035302 pacid=23170533 polypeptide=Lus10035302 locus=Lus10035302.g ID=Lus10035302.BGIv1.0 annot-version=v1.0 ATGAATCCCAATTTGGGTTTAGTCGTTCTCATCTTGGCATCGATTCTAGGTCTAGTAGCTCCGCAATGTAGCAGAGGCTGCGGTTTGGCTCTAGCTTCGT ACTACGTTTGGGAAGGAAGCAACTTAACCTACATCCTCCAGCTCATGAAATCCACCGTCCAGGGAGAATCGGACTTCGACAGCCTGTTAAGCTACAACCG GCAGATAGCCAACAAAGACAGTGTCTTTCAAGACACGAGGATCAACGTCCCTTTCCCTTGCGAGTGCATCAACGGCCAGCTCCTCGGCCACGTCTTCCTC TATCCGACGGTCACAGGGGACACCTACGAGCTCATCGCCGCCAGGAACTACGCGAATTTGACCACCGTTGACTGGCTGCAGAGGTTCAATACTTATCCTG CTAATAACATCCCCGATACGAACGCGGTGGTGAATGTTACGGTGAACTGCTCCTGTGGTGACAGCTTGATTTCCAGGGAGTATGGTCTATTTGTTACCTA TCCGCTTCTTCCTGGTGATAGTCTTGCTTCGATTGCGCGGAGTAGTAATGTTTCGGGGGATTTGCTGCAGCGGTATAATCCTGGTGTGAATTTCAGTGGC GGGAGGGGCTTGGTTTATGTTCCTGGCAGAGATGCAAGCAATAGCTATCGCCCCTTGAGATCAAGCTCTTCTGGTGGCTTATCTGGAGGCTTTGTTGCTG GCATATCTATAGCAGCAGTTGCTGTGGCGGTGTTGTTGGGCCCTGGAACTAACTCAGATAAGCCATTGGAATCAGCTGGCGGAGCAGGTTCTGGCGGACT AACTGGCATTACTGTTGACAAATCGGTGGAGTTCTCATATGAGGAACTCTCCAAGGCTACCGATGACTTCAGTTTGGCTAACAAGATTGGTCAAGGTGGC TTTGGAGCTGTTTACTATGCAGAATTACGGGGAGAGAAAGCTGCAATCAAGAAGATGGACATGCAAGCATCAAAGGAATTTTTTGCTGAACTCAAGGTTT TGACACATGTTCATCACTTGAACCTGGTCCGGCTGATTGGATACTGCGTTGAAGGATCTCTCTTCCTGGTGTATGAATTCATAGAGAACGGGAACTTATC TCAGCATTTGCGCGGTTCTGAGAGGGAACCATTATCCTGGGCGGCCCGGGTACAAATTGCACTTGATTCTGCCAGAGGCCTTGAATACATCCATGAGCAT ACCGTTCCTGTATATATCCACCGTGATATCAAGTCAGCAAATATATTGATTGACAAGAACTATAGAGCAAAGGTTGCAGATTTTGGTTTAACGAAACTGA CCGAAGTTGGAAGCACCTCGCTGCCTACACGTCTTGTCGGCACATTCGGATACATGCCGCCAGAGTATGCTCAATATGGCGATGTTTCTCCGAAAGTTGA TGTATATGCCCTTGGAGTCGTCCTTTACGAGCTTATTTCGGCTAAAGAAGCCATTGTAAAGCCAAATGGATCCAACACCGAATCAAGAGGCCTCGTCGCG TTGTTTGATGATGTCCTCGACCAACCGGATCCTCAAGAAGACATCAGAAAACTAGTCGATCCAAGGCTCGGCGAAAACTACCCCCTTGACGCAGTTCGCA AGATGGCCCAGCTCGCCAAGGCGTGCACACAAGAGAACCCTCAACTACGTCCGAGCATGAGATCCATCGTCGTAGCTCTAATGACGCTCTCCTCAGCAAC CGAGGATTGGGATGTCGGTTCGTTCTACGACAACCAAGCTCTTGTCAACCTAATGTCCGGACGTGGCAGTAGCAGTGGGGAAGATGACGACAATGGTGAA GAAGCGGTGGACAGCGATAAGTACCATGGTTACAGGGATGTTAACAATACTGGTGGCTATGATGAAGAGAAAGATCTTTTTGGAGATGACAATCAAGAGT ATATTAAGACTACTGCAGTTAGCCAGTATCCGATTCCTGTGTTACCTGCTGTACGACCGCTCAATAATCAGGGAAGAGGAGGTTTTGGACGTGGTCGTTG GCAAAGTGATAGAGGTGCAGGGCTCCTTCCCAGACCAGGATATCCTCCTCGGCAGGGGTATGGTGGATACGGAAACAAATTCGGGAATGCTCCTCGGGAT GAACGATTTGTCTCTGAACTGAAGTTTTCAAAGAGTGAAGAAACCTTGTCAAGAAAATGTGTGGCTATCCAAGCGCCATGTGAACTTGGTTGCTATAGTC GTGTTGAAGGTGGAGAAGTCTTCTTTGATGATCGCAACTTGAGGCTTTTTAAGCGTATGATATCTGAAGACGTTGGGGCAGATCTTAATGAAGGCTTTGA TACATTCACTGAAAAGAAAGATTTGGGCTCTCAAGGGTTTGGCGACCTGCTAGGTTGTATACGAGATAAGAATATTCCCTTGGAGAATATGCATTTTATT ACTTTCCGCAACAACTTAAATAAGATAATGCAAACTGCATATATTCGACATGAGCCATGGGAAATGGGAGTGCATAAGAGGAATGGAGTTGTGTATCTTG ATGTACATAAACTTCCAGAACGACCTCAGAGTGAGTTGGAGCGTCGAAGGTGCTACTGGGGATACTGTTTTGAGACCTTAGCCACTGAAGATCCGGGCAG AAGTGACGGAGAAGGGATCCATAATGTTGATGCCAACGTGGAATATTGTGCCGTGTTTAAGACAAAGTTAGGGGCACATCGCATTTTGATGGGTGCTGAA ATGGACTGTTGTGATTCAACTGACGATGGAAGGAGGTTCTATGTGGAGTTGAAGACGAATCGGGAGTTGGAGTATCATACAGAGGAAAGATTTGAGAGAG AGAAACTGCTCAAGGTTTGGATTCAATCGTTCTTGGCTGGCGTTCCATACATTGTCATTGGATTTAGGGATGATCATGGCCGACTTGTACGAACAGAGAG ACTGAAAACCAAAGATATAACACAAAGAGTTAAAATGAAGAATTATTGGCAGGGAGGTGTCTGCCTAGCATTTGCCGACGAGGTGCTATGCTGGCTTTTC GGCACAGTGAAAGAAAATCAAGATTACATACTGCAGTTTGCTGCGCCCTTCATGCGCTTAGAGCTTCTGCAAGCATCGTCTTGTCCCGACGCAATCACTA ACCATGTCAGTCAGTTGGTTGTGTGA
AA sequence Show only first row Show all	>Lus10035302 pacid=23170533 polypeptide=Lus10035302 locus=Lus10035302.g ID=Lus10035302.BGIv1.0 annot-version=v1.0 MNPNLGLVVLILASILGLVAPQCSRGCGLALASYYVWEGSNLTYILQLMKSTVQGESDFDSLLSYNRQIANKDSVFQDTRINVPFPCECINGQLLGHVFL YPTVTGDTYELIAARNYANLTTVDWLQRFNTYPANNIPDTNAVVNVTVNCSCGDSLISREYGLFVTYPLLPGDSLASIARSSNVSGDLLQRYNPGVNFSG GRGLVYVPGRDASNSYRPLRSSSSGGLSGGFVAGISIAAVAVAVLLGPGTNSDKPLESAGGAGSGGLTGITVDKSVEFSYEELSKATDDFSLANKIGQGG FGAVYYAELRGEKAAIKKMDMQASKEFFAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEFIENGNLSQHLRGSEREPLSWAARVQIALDSARGLEYIHEH TVPVYIHRDIKSANILIDKNYRAKVADFGLTKLTEVGSTSLPTRLVGTFGYMPPEYAQYGDVSPKVDVYALGVVLYELISAKEAIVKPNGSNTESRGLVA LFDDVLDQPDPQEDIRKLVDPRLGENYPLDAVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSATEDWDVGSFYDNQALVNLMSGRGSSSGEDDDNGE EAVDSDKYHGYRDVNNTGGYDEEKDLFGDDNQEYIKTTAVSQYPIPVLPAVRPLNNQGRGGFGRGRWQSDRGAGLLPRPGYPPRQGYGGYGNKFGNAPRD ERFVSELKFSKSEETLSRKCVAIQAPCELGCYSRVEGGEVFFDDRNLRLFKRMISEDVGADLNEGFDTFTEKKDLGSQGFGDLLGCIRDKNIPLENMHFI TFRNNLNKIMQTAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSELERRRCYWGYCFETLATEDPGRSDGEGIHNVDANVEYCAVFKTKLGAHRILMGAE MDCCDSTDDGRRFYVELKTNRELEYHTEERFEREKLLKVWIQSFLAGVPYIVIGFRDDHGRLVRTERLKTKDITQRVKMKNYWQGGVCLAFADEVLCWLF GTVKENQDYILQFAAPFMRLELLQASSCPDAITNHVSQLVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035302 [exp]	0	1
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	1.4	0.9575
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	5.7	0.9443
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	8.0	0.9382
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	11.3	0.9320
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	13.0	0.9332
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	13.1	0.9403
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	16.1	0.9345
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	16.4	0.9212
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	16.5	0.9263
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	18.0	0.9261

Compare expression of checked genes

Lus10035302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.