Plant FIBer expression Database

Lus10035303 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05060 300 / 4e-103 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030021
[exp]
442 / 2e-159 AT1G05060 276 / 7e-94 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G156700
[exp]
358 / 5e-126 AT1G05060 342 / 6e-120 unknown protein
PFAM info
Representative CDS sequence
>Lus10035303 pacid=23170514 polypeptide=Lus10035303 locus=Lus10035303.g ID=Lus10035303.BGIv1.0 annot-version=v1.0
ATGAGTTTTCTCGCGGGAAGGCTAGCGGGCAAAGAAGGCGCCTACTTTTTCCAGGAGTCCAAACAAGCTGTAAATCGTCTCGCCGAGAAACTGCCTGCCA
AACCAACCACCGCCGGACTCCTATCCCCACCGCCGCCGCCGCCGCAGGATTCCCACGCCGACGTGCTTCCTGAAGTCCTGCGCCATTCACTTCCACCGGG
TATCTTCGGTAAGCCGTCGGATTCATCTACCCTCTCAACTGGATCCAAGTGGATTCTCCCCTCCGACCCGAAATCCGGCTCCGGTGTTTCGTCGGACAAG
CTCAATCCTCTAAGGGCTTATGTTTCTCTGCCCCAGGTCACTTTTGGTCCCAAAAGGTGGGAATTGCCGAGTCAGGGGCACTCGATGATGGCGTCGACGG
CGAATGATAGGAGAGTTGACAAGTATACCCCTATGAATCCTGAGAAGCTCAAGGCTGCAGCTGAGGGTCTTGCTCAGATTGGGAAGGCATTTGCAGTAGC
TACCGCACTCGTGTTTGGTGGCTCTGCTTTGGTGTTTGGCGTAGCAGTTTCCAAGCTGGAGTTGCAGAATGGAGACGATGTCCGTAGCAGAGGCAAGGAC
ATGGTTCAGCCGAGGTTGGATACAGTTAGGGAGCAACTGATGCCGATTCGAATTTGGGTCGAAGACAGATCGAAGAAGTGGCATCTGGATAGGCCAGAGG
ACGTCAAGGAGAAGCCTATGATCAAGGAGCTTTCCAAGATTCTCGGAGCGAAAACCTCACCTTGA
AA sequence
>Lus10035303 pacid=23170514 polypeptide=Lus10035303 locus=Lus10035303.g ID=Lus10035303.BGIv1.0 annot-version=v1.0
MSFLAGRLAGKEGAYFFQESKQAVNRLAEKLPAKPTTAGLLSPPPPPPQDSHADVLPEVLRHSLPPGIFGKPSDSSTLSTGSKWILPSDPKSGSGVSSDK
LNPLRAYVSLPQVTFGPKRWELPSQGHSMMASTANDRRVDKYTPMNPEKLKAAAEGLAQIGKAFAVATALVFGGSALVFGVAVSKLELQNGDDVRSRGKD
MVQPRLDTVREQLMPIRIWVEDRSKKWHLDRPEDVKEKPMIKELSKILGAKTSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G05060 unknown protein Lus10035303
[exp]
0 1
Lus10013034
[exp]
1.0 0.9743
AT1G22710 SUT1, ATSUC2, S... SUCROSE TRANSPORTER 1, ARABIDO... Lus10009428
[exp]
5.5 0.9594
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10032593
[exp]
8.5 0.9620
AT2G03200 Eukaryotic aspartyl protease f... Lus10025702
[exp]
10.7 0.9605
AT4G13940 MEE58, EMB1395,... MATERNAL EFFECT EMBRYO ARREST ... Lus10043156
[exp]
12.0 0.9601
AT4G17980 NAC ANAC071 NAC domain containing protein ... Lus10035373
[exp]
12.2 0.9284
AT1G43700 bZIP SUE3, AtbZIP51,... sulphate utilization efficienc... Lus10028595
[exp]
12.4 0.9220
AT3G13480 unknown protein Lus10013407
[exp]
13.7 0.9355
AT2G03550 alpha/beta-Hydrolases superfam... Lus10019885
[exp]
15.5 0.9576
AT3G54450 Major facilitator superfamily ... Lus10039521
[exp]
16.6 0.9460

Lus10035303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.