Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78380 223 / 6e-74 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17180 219 / 2e-72 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G53680 218 / 1e-71 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78370 214 / 3e-70 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 210 / 7e-69 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT3G43800 205 / 1e-66 ATGSTU27 glutathione S-transferase tau 27 (.1) AT1G17170 204 / 2e-66 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78360 201 / 3e-65 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17190 196 / 3e-63 ATGSTU26 glutathione S-transferase tau 26 (.1) AT1G78320 190 / 4e-61 ATGSTU23 glutathione S-transferase TAU 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030020 [exp] 407 / 1e-146 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10042468 [exp] 254 / 6e-86 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 253 / 1e-80 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 234 / 5e-78 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 216 / 5e-71 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026198 [exp] 214 / 4e-70 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 201 / 4e-65 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10019480 [exp] 172 / 1e-53 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 159 / 2e-48 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080400 [exp] 298 / 1e-103 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.004G080700 [exp] 273 / 5e-94 AT1G78380 217 / 6e-72 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.019G130433 [exp] 239 / 4e-80 AT1G17180 292 / 3e-101 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 236 / 6e-79 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437000 [exp] 233 / 7e-78 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 231 / 3e-77 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 230 / 8e-77 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 229 / 3e-76 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 224 / 2e-74 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436800 [exp] 220 / 8e-73 AT1G17180 308 / 2e-107 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035304 pacid=23170603 polypeptide=Lus10035304 locus=Lus10035304.g ID=Lus10035304.BGIv1.0 annot-version=v1.0 ATGGCAAATAACGACTTGGTGATCTTGGACTGCTGGGCTAGCCCGTTCTGCGCACGGGTGAAGCTTGCCTTGGCCGTTAAGGGGCTTGAGTTCGAAGCAA GACCCGAGGACCTATTTGGCGGGAAGAGCGAGCTTTTGCTCGCTTCAAACCCGATCTACAAGAAGGTCCCTGTGTTCTTGCACAATGGCAACCCCATCTG CGAGTCATCCATCATTGTTAGTTACATCGACGAGAAATGGCCTTCTCCTTCTCTGCTGCCTTCCTCCCCATACGAGCGCTCCCAGGCTCGCTTCTGGGCT GACTATATTGATAAAAAGCTGTTTGACTCAGCGAGTGGCGTATGGAAGGCTTCGGGGGAAGAAGCGGTCGAGGGAGCTAAGAAGGAGTTCGTCGAGGTGC TGAAGGTGTTGGAAGGAGGCTTGGGGGAGAAGGAATACTTTGGAGGGGAAGGATTAGGGTTTGTGGATGTCCTTGGGATCCCAATCACTACTTGGTTCTT GGCTAGTGAGAAGTATGGCAACTTTAAGGTTGAGGATGAGTGCCCTAAGTTGTCAGCTTGGATCAAAAGATGCATGGAGCAGGAAAAAGTTGCTAGTTCT GTTCCGGACCCGGTACTGGTCTATGAATTCGTCATCAATCTCAGGAAGATGCTGGGAATTGCCTAA
AA sequence Show only first row Show all	>Lus10035304 pacid=23170603 polypeptide=Lus10035304 locus=Lus10035304.g ID=Lus10035304.BGIv1.0 annot-version=v1.0 MANNDLVILDCWASPFCARVKLALAVKGLEFEARPEDLFGGKSELLLASNPIYKKVPVFLHNGNPICESSIIVSYIDEKWPSPSLLPSSPYERSQARFWA DYIDKKLFDSASGVWKASGEEAVEGAKKEFVEVLKVLEGGLGEKEYFGGEGLGFVDVLGIPITTWFLASEKYGNFKVEDECPKLSAWIKRCMEQEKVASS VPDPVLVYEFVINLRKMLGIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10035304 [exp]	0	1
AT1G76220			Arabidopsis protein of unknown...		Lus10001991 [exp]	3.7	0.8744
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	15.2	0.7590
AT4G18425			Protein of unknown function (D...		Lus10015394 [exp]	24.2	0.8372
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10014376 [exp]	32.6	0.8010
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10038556 [exp]	33.8	0.8047
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030892 [exp]	42.3	0.8103
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Lus10027275 [exp]	70.1	0.7279
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10007569 [exp]	87.3	0.6980
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	116.6	0.7636
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	119.6	0.7316

Compare expression of checked genes

Lus10035304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.