Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17270 862 / 0 Protein prenylyltransferase superfamily protein (.1) AT5G37130 807 / 0 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030019 [exp] 1429 / 0 AT5G17270 998 / 0.0 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080800 [exp] 925 / 0 AT5G17270 909 / 0.0 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10035305 pacid=23170507 polypeptide=Lus10035305 locus=Lus10035305.g ID=Lus10035305.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCTCCACTCCCTGAACTCCAACGCCCCAAGCGGGACCTTATCCGCAGCTACGAACTACGTCTCCTTCGTTGCACTTACTCTCCTCCATCTT CAGACCATCAATCCCAATCTGCCTCTTCACCATCTCCCGGCCCTCTCAGTAGTAAGCTACATGAGACCATTAATCAGGTGCTCAGCTTCATCGAGAACGG GAACTATCTCCAAGCTCTTTCCTTCGCTGCCGAGCTAATCTCACTTGACTTCTCCGACGAGTGCTCCGACGACGACCGAATTCTATCCGAGCTGTATGCC AACGTTGAAAGGTTCATTGTGAATGGAGATGAAGATGATGAGGACGAAATTGCCTGCAGGATGATTCTTGTGTTGTGTTTTGGCGTTGCCGCGCTTTTCT ACTTCACTCAGTGCAATGCTACTGGCCCACTGGGTGAGTTATCGTCGTCGCCTCTGCCATTCAAATGCTTAGAAGGTGAAGAGAAGATAGACTGGGAAGC TTGGGCAAGGAATCAGCTTATGTCTGAAGGTTCTGAGTTGCTTGGAAAGTTCTCCAATCTTCAGTGCATAGTTTTTGCTAAAATCCTGGCCATGAAGGCG AAAGATTTGTCGTTTAAAGGGAGTGTTTCTTCTACATACGGGATGAGAAGCATTTCTTGGTGGCTCTCTAGGGTTTTACTTACTCAACAAAGGGTTTTGC ACGAGCTGTCGTCTTCTGTGTTCGATTTGTTGCAAGTGTATGTGGTTGAAACGCTAAACCATTTTGACACTAGGGAGAAGGTGACAAACTACTGGGGTTC TCAGTTACTTGATGAAGAAGCTTCTACCCTCGTCTCGATTTCCAACTTAGAGGCTGGAATTATACGGCAGCACTATGGACGTGTTGATTTAGGAAGAATG CATATCGATTCAGCCGAAGCTGCTGCAGGGCTTGAGCTGTCTGTTACCGGAGTTCTTGGATATCGTACTATCCATCAAGTGAATCCAACGGCTCAGAGGG TTCTTGTTTCAAACAGAAGTTCTTCTGTTAGCTCTGATTCACAGTCTAAGATTGTGGAACAAAGTTTAGATGCTCTAAAACCAGAAAATTTCGAGTCTTC CGACATACTTCGGAAGCCAAAGCTATTGGATAACCGCGGTAAAGCTGGAATGAAATTTCAGCAAGACGAGATTAGTGGTCCCGGTGCTGCTTCTTCTCCT TTGAGTCCAACCCAACAGGCAGTGATCCTGGCACATTGCATTTTGATCGAGAAAGGTTCACGACAAGATGAATTGCAGAAGTGGGATGTAGCTCCGTATA TCGAGGCAATCGATTCTCAGCCATCATCATTGTTTGCTCTACAATATTTTTGTGACCTTTTGCGTGTTCGGTGGGAGTCAACTCGTAGTCACACAAAAGT TCGTGCAGTAGAAATGATGGGAAAGCTGGTCGAGGATCTTGAAAAGCCGTCTCCTGGAGTGGAACAAAGGATTCCTTTTTGCTATGTAGCTAATATCCCT ACAATTCCAGCTCTGAAAAAGGAATATGGTGAACTCCTTGTGAGCTGTGGCCTGATAGGAGAGGCTCTTGGAATCTTTGAGGATTTGGAGTTATGGGACA ATTTGATATACTGCAACATCTTGCTGGATAAGAAACCAGCTGCTGTAGAACTCATAAGGAAGCGACTCTCTGAAACGCCTAAGGATCCAAGATTATGGTG TTCCTTGGGTGATGTCACAAACAATGATAGCTGCTACCAAAAGGCTCTTGAGGTTTCAAATAACAAGTCTGCTAGAGCCAAGCGTGCGCTTGCCCGAAGT GCTTATAATAGAGGGGAGTATGAAAAATCTAAAGTTCTTTGGGAATCTGCAATGGCCTTAAACTCTTTGTTTCCAGATGGTTGGTTTGCTCTTGGTGCTG CAGCATTGAAGGCTAGAGATTTAGATAAGGCCCTGGATGGATTTACCCGTGCTGTTCAACTCGATCCTGATCATGGAGAGTCGTGGAATAATATTGCTTG TTTGCATATGATGAAGAAGAGGAGCAAAGAATCTTTCATTGCCTTCGGTGAAGCATTGAAGTACAAACGAGACAGCTGGGAAATGTGGGAAAACTATGGT CATGTTGCCATGGACGTGGATAATATATGGAAGGCTTTGGAAGCTGTGCAGAGAGTTGTCGATACGACCAATTTTAAGAGAATCGATGTCGAGTTGTTGG ACCGGATCGTGGTAGAAATGGAAAGAAGAACTTCGGGTACTGATTTGACCATATCAGGTGATTCTAAATGCAGTTCAGAAGCAGAGGGTGGAAACCAAAG GGAAACTTTGCAGTTGCTAGAACTGCTGGGTAAACTTCTACAAAAGATAGTGAAAAAGGTGAGCAAAGCCGAGATTTGGGGATTGTTCGCTAGATGGCAT AGAATCAAAGGAGATCTCACAATGTGCTCAGAAGCCCTATTGAAGCAAATCAGATCATATCAGGGGTCTGATCTATGGAAAGATAAAGACCGATTCGTAA AGTTTGCGCACGCTTCGTTGGAGCTAAGCAAAGTGTACGTGGAGCTTTCTTCGTCTACAGGTAGTCGCCGAGAGCTATCATCGGCCGAGATGCACCTGAA AAACACGATTAAACAGGCGAGTTTTAAGATTGCAGAGCGCTTCTCGGAAACACAAGGGTTTCGGGATCTTCAGACTTGTCTCGACGAGGTTAGGCTGAAA CTCGAATCTCATACTGCACTAGCTTCGTAG
AA sequence Show only first row Show all	>Lus10035305 pacid=23170507 polypeptide=Lus10035305 locus=Lus10035305.g ID=Lus10035305.BGIv1.0 annot-version=v1.0 MAEAPLPELQRPKRDLIRSYELRLLRCTYSPPSSDHQSQSASSPSPGPLSSKLHETINQVLSFIENGNYLQALSFAAELISLDFSDECSDDDRILSELYA NVERFIVNGDEDDEDEIACRMILVLCFGVAALFYFTQCNATGPLGELSSSPLPFKCLEGEEKIDWEAWARNQLMSEGSELLGKFSNLQCIVFAKILAMKA KDLSFKGSVSSTYGMRSISWWLSRVLLTQQRVLHELSSSVFDLLQVYVVETLNHFDTREKVTNYWGSQLLDEEASTLVSISNLEAGIIRQHYGRVDLGRM HIDSAEAAAGLELSVTGVLGYRTIHQVNPTAQRVLVSNRSSSVSSDSQSKIVEQSLDALKPENFESSDILRKPKLLDNRGKAGMKFQQDEISGPGAASSP LSPTQQAVILAHCILIEKGSRQDELQKWDVAPYIEAIDSQPSSLFALQYFCDLLRVRWESTRSHTKVRAVEMMGKLVEDLEKPSPGVEQRIPFCYVANIP TIPALKKEYGELLVSCGLIGEALGIFEDLELWDNLIYCNILLDKKPAAVELIRKRLSETPKDPRLWCSLGDVTNNDSCYQKALEVSNNKSARAKRALARS AYNRGEYEKSKVLWESAMALNSLFPDGWFALGAAALKARDLDKALDGFTRAVQLDPDHGESWNNIACLHMMKKRSKESFIAFGEALKYKRDSWEMWENYG HVAMDVDNIWKALEAVQRVVDTTNFKRIDVELLDRIVVEMERRTSGTDLTISGDSKCSSEAEGGNQRETLQLLELLGKLLQKIVKKVSKAEIWGLFARWH RIKGDLTMCSEALLKQIRSYQGSDLWKDKDRFVKFAHASLELSKVYVELSSSTGSRRELSSAEMHLKNTIKQASFKIAERFSETQGFRDLQTCLDEVRLK LESHTALAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	0	1
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	4.2	0.9055
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	4.5	0.9186
AT2G34357			ARM repeat superfamily protein...		Lus10021944 [exp]	9.1	0.9098
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	9.2	0.8815
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10004716 [exp]	10.3	0.8162
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	11.8	0.8858
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	11.8	0.8993
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	13.5	0.7901
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041555 [exp]	14.3	0.8970
AT4G32910			unknown protein		Lus10038723 [exp]	14.5	0.8902

Compare expression of checked genes

Lus10035305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.