Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41270 139 / 2e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030018 [exp] 425 / 1e-150 AT5G41270 163 / 3e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G127200 [exp] 157 / 9e-46 AT5G41270 124 / 1e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04032 [flax] [poplar] Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain
Representative CDS sequence Show only first row Show all	>Lus10035306 pacid=23170584 polypeptide=Lus10035306 locus=Lus10035306.g ID=Lus10035306.BGIv1.0 annot-version=v1.0 ATGGCGAAGGGAAAGAAACCGATGGACCCACAATCAACGGGGAAGTCGCAGGAAAAGGGTCCGCCTCGTAATTCCAGGGCAATGCTGAAACTCGACCACC TTCAAAGACTAGCGGAGTGGGCTGGTGCAGAAGCTTCAATCCCATCTCTCGGTGCTTTCCTCGGTCGCCAGTTCGCCACCGCTGGAGAAACTCTGGGCAT CTCACCTGACCCTTTGCTTATTCCTTGCCAGAGATGTGAGACTATTCTTAAGCCAGGATTCAATTGCACGATCCGGATTGAGAAGAATCGATCGAAGGCG AAACACAGACGCAAGAAGAGCAAGACGAACCACACTCAGTCACAGAACAATGTCGTCTACACGTGCCATTTCTGTTCTTTCAGGAACCAAAAACGAGGGA CTCCGAAGGGCCATGTCAAAGGCATATCTCCACCCAAGCCAAAGCCTACTAAGCCTTGTTTGGCCAAGCCAGTCACTTCCACAAACCCATTCACCCCACA TAAGAACAAGAAGGATACTGAGACGATGAAAGTTGATGAGGTGGCTCTGCCTGCTATTCCGGAGGACACTCCGATGACAAACAGCCCGGGAACTCCATTA GATAGAAGTGCTGGAGCAACAACACCGTTGTTGGAGGCCTTGAGGAGGAAGAGGAACAGATCGAAAAGCAAGAAAAAGCCGGAAGATTCTGAGAGTGCTT CAGCTGAGACAATGGTGGAGACGGCTGAGACGAGCGTTGGTGGTTCGAAGAAGAAGAGGAAAGCATGGACAAGCTTGAAGGAGATAGCTGAGAGTAACGA GAAAGATGCCAGGCAAAAACTTAGTAACTTTGTACTCCCATTTTCTTTGTAG
AA sequence Show only first row Show all	>Lus10035306 pacid=23170584 polypeptide=Lus10035306 locus=Lus10035306.g ID=Lus10035306.BGIv1.0 annot-version=v1.0 MAKGKKPMDPQSTGKSQEKGPPRNSRAMLKLDHLQRLAEWAGAEASIPSLGAFLGRQFATAGETLGISPDPLLIPCQRCETILKPGFNCTIRIEKNRSKA KHRRKKSKTNHTQSQNNVVYTCHFCSFRNQKRGTPKGHVKGISPPKPKPTKPCLAKPVTSTNPFTPHKNKKDTETMKVDEVALPAIPEDTPMTNSPGTPL DRSAGATTPLLEALRRKRNRSKSKKKPEDSESASAETMVETAETSVGGSKKKRKAWTSLKEIAESNEKDARQKLSNFVLPFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41270			unknown protein		Lus10035306 [exp]	0	1
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	2.8	0.8738
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	4.4	0.8797
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	4.9	0.8542
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	7.3	0.8630
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	7.9	0.8411
					Lus10018968 [exp]	8.2	0.8277
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	8.8	0.8445
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	9.7	0.8257
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	13.0	0.8422
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10033922 [exp]	13.3	0.8282

Compare expression of checked genes

Lus10035306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.