Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32180 190 / 2e-63 PTAC18 plastid transcriptionally active 18 (.1) AT2G32650 190 / 2e-63 RmlC-like cupins superfamily protein (.1.2) AT4G10300 61 / 1e-12 RmlC-like cupins superfamily protein (.1) AT4G10290 55 / 3e-10 RmlC-like cupins superfamily protein (.1) AT3G04300 51 / 3e-09 RmlC-like cupins superfamily protein (.1) AT4G10280 51 / 8e-09 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030017 [exp] 255 / 6e-89 AT2G32180 192 / 4e-64 plastid transcriptionally active 18 (.1) Lus10035659 [exp] 59 / 3e-11 AT4G10300 175 / 5e-57 RmlC-like cupins superfamily protein (.1) Lus10037245 [exp] 57 / 1e-10 AT4G10300 149 / 8e-47 RmlC-like cupins superfamily protein (.1) Lus10035660 [exp] 56 / 2e-10 AT4G10300 147 / 5e-46 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156900 [exp] 201 / 1e-67 AT2G32650 203 / 2e-68 RmlC-like cupins superfamily protein (.1.2) Potri.013G089600 [exp] 64 / 2e-13 AT4G10300 171 / 1e-55 RmlC-like cupins superfamily protein (.1) Potri.002G254800 [exp] 45 / 6e-07 AT3G04300 143 / 8e-46 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF05899 [flax] [poplar] Cupin_3 Protein of unknown function (DUF861)
Representative CDS sequence Show only first row Show all	>Lus10035307 pacid=23170479 polypeptide=Lus10035307 locus=Lus10035307.g ID=Lus10035307.BGIv1.0 annot-version=v1.0 ATGGCAAGTTTGACAGCTTCCCCAAACATAAGCTTCTTATCAGCCAGCAGCAGAAGCAATATCAAGAATCATAGCGGTCGAACCAATCGATGTCCGAGCG TGAGAGCATCAGCAGTGCATGCGGTGAAGTCGCTCGAAGAGCTCTACAATGTGAGGGTGGAGAGGAAAGTGTTGCCTCAGCGATTGGATGAGCTCGGTGT TTCGAGATGGTCTTCTTGGAAGACTGGCAAATGCAAGCTTCCCTGGGACTGGCATGTAGACCAGTTGGTGTACATTGAAGAAGGGGAAGTCAGGGTTGTT CCCGAAGGCAGTAAGCGATACATGCAGTTCGTGGCTGGTGACCTCGTTCGTTACCCGAAATGGTTCGAGGCTGATCTCTGGTTCAACGGTCCTTACCAGG AGCGTTATAGCTTCCGTGCTTATGGCGATGACTAG
AA sequence Show only first row Show all	>Lus10035307 pacid=23170479 polypeptide=Lus10035307 locus=Lus10035307.g ID=Lus10035307.BGIv1.0 annot-version=v1.0 MASLTASPNISFLSASSRSNIKNHSGRTNRCPSVRASAVHAVKSLEELYNVRVERKVLPQRLDELGVSRWSSWKTGKCKLPWDWHVDQLVYIEEGEVRVV PEGSKRYMQFVAGDLVRYPKWFEADLWFNGPYQERYSFRAYGDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	0	1
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	1.0	0.9550
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	2.0	0.9357
AT5G02710			unknown protein		Lus10015040 [exp]	6.1	0.8588
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	6.6	0.8878
AT2G41950			unknown protein		Lus10029301 [exp]	8.2	0.8770
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	9.2	0.8682
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	10.0	0.8960
AT5G02710			unknown protein		Lus10003988 [exp]	13.2	0.8686
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	14.1	0.9102
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006174 [exp]	14.6	0.7795

Compare expression of checked genes

Lus10035307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.