Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 55 / 6e-09 RNI-like superfamily protein (.1) AT1G49610 54 / 2e-08 F-box family protein (.1) AT5G02700 54 / 2e-08 F-box/RNI-like superfamily protein (.1) AT1G80470 52 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 52 / 8e-08 F-box/RNI-like superfamily protein (.1) AT5G03100 51 / 1e-07 F-box/RNI-like superfamily protein (.1) AT5G02910 51 / 2e-07 F-box/RNI-like superfamily protein (.1.2) AT5G22660 50 / 2e-07 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) AT5G22720 50 / 4e-07 F-box/RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035322 [exp] 152 / 4e-44 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10029953 [exp] 131 / 4e-37 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 133 / 6e-36 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10027471 [exp] 127 / 2e-35 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035326 [exp] 120 / 1e-33 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10018543 [exp] 115 / 2e-29 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029952 [exp] 107 / 9e-28 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10030016 [exp] 98 / 2e-23 AT2G32970 799 / 0.0 unknown protein Lus10039271 [exp] 92 / 5e-22 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104200 [exp] 57 / 1e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 57 / 2e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 52 / 5e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 48 / 1e-06 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 46 / 6e-06 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.013G146800 [exp] 44 / 3e-05 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 42 / 0.0002 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 42 / 0.0003 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.001G395000 [exp] 41 / 0.0004 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G098700 [exp] 41 / 0.0005 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035308 pacid=23170612 polypeptide=Lus10035308 locus=Lus10035308.g ID=Lus10035308.BGIv1.0 annot-version=v1.0 ATGGAGAACAAGCACACAAAGAAATCGGCCGCCGCCGGCGAAGATTTGATTTCAAAATTTCCAGACGAAATCATTCACTCCATCATTGCCGGCGAAGATT TGATTTCAAAATTTCCAGACGAAATCATTCACTCCATCATTGACCGTATACCGTGTCCCAAACAGGCGGCGCAAACCAGTACACTGTCCAAGCGATGGGG AGACGTCTGGTGCTCTGATCCCGTCGTAGAGTTCGATCCCAAGATGATGAAGATGGAACTTTTTGAGGAGTTCGCCAACGCAACCATGAAAAGGTTTTCT GGAGACAGACTGTTGCGGATGGAAGAACTCGGAATATGGATTGAACCAGGCAAGAACACCACCTGTTCGCCGCCTATTGAGAAACTGCTGGATCTGGCCT CGAAGAGAAAAGCAGAGGATGTCACCATCCAGATATGGACGGAAGACGTGATGATCCACTTACCCTTCGAATTACTCTCCAATTCCAGTGCAAAGAATCT CCGGCTGGGAGGAATTAGGTTTGCGTCCAACAAAAATGGTGACGATCATGATCTACTCGTTCCGATGAATTCACTACATTGGCTGGTAATGAGTACTGTT GCATTCGAGACGAGAGGCTTTTTGCAAATCTGA
AA sequence Show only first row Show all	>Lus10035308 pacid=23170612 polypeptide=Lus10035308 locus=Lus10035308.g ID=Lus10035308.BGIv1.0 annot-version=v1.0 MENKHTKKSAAAGEDLISKFPDEIIHSIIAGEDLISKFPDEIIHSIIDRIPCPKQAAQTSTLSKRWGDVWCSDPVVEFDPKMMKMELFEEFANATMKRFS GDRLLRMEELGIWIEPGKNTTCSPPIEKLLDLASKRKAEDVTIQIWTEDVMIHLPFELLSNSSAKNLRLGGIRFASNKNGDDHDLLVPMNSLHWLVMSTV AFETRGFLQI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10035308 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10001375 [exp]	21.6	0.7536
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10033281 [exp]	25.0	0.7858
					Lus10037828 [exp]	31.5	0.7642
AT3G08960			ARM repeat superfamily protein...		Lus10008367 [exp]	50.1	0.7137
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	54.5	0.7332
					Lus10027106 [exp]	56.6	0.6837
AT2G27830			unknown protein		Lus10015082 [exp]	61.0	0.6757
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	69.4	0.7272
					Lus10034709 [exp]	79.6	0.7501
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10025942 [exp]	117.2	0.7339

Compare expression of checked genes

Lus10035308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.