Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32980 444 / 7e-159 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030015 [exp] 504 / 0 AT2G32980 402 / 2e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225100 [exp] 460 / 2e-165 AT2G32980 436 / 1e-155 unknown protein Potri.014G158000 [exp] 441 / 1e-157 AT2G32980 429 / 1e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035310 pacid=23170629 polypeptide=Lus10035310 locus=Lus10035310.g ID=Lus10035310.BGIv1.0 annot-version=v1.0 ATGTCGATGGGGAGTGACACAACTTGGGTTGGTAAGAAGCCTCTCCGGCGGATCGGAGGCATGTCGGATGCGCTCTCCATCGCCGCCGATCTTGGGTATT CGGTGGCCCCTCCTCCGTCCCAGGAGGAAGTTCAGAACCTGTCAAGCTCTACCGGCGAAAAGGGTGATGACTTAATTAGGGTATTGAGAGAACTAACGGC AGTTCAGAGGAAAACTGCGGATCTTCAGGTTGAACTTCAAGGCCGAAAGGATGACAAAAATGTGGCACATTTGACACACGTGAGTGAAATGGAGAAGAAG ATCGAGACATTGTCTAGGATTACCACCATACTGAAAGATGTTATCCAGAATAAGGACCGTATTATAGCTCGACTTCAACAACCTTACTCACTTGATTGCA TCCCTGTAGAAGCAGAATATCAGAAACAATTTTCGGAACTGCTTATGAAAGCTGCAAGTGACTACGGCGCCTTGACAGCATCTGTTTCTGATTTCCAATG GACTCAAAACTTCAGGGAGTCTCCTTCTGTATGGGGGGAAATGCTGCGGCCAATTCCTGTTGCATTAGCATCGTGCACCCGATTCTTCGAAGCCATGTCT GCAATGAGAGAGTCGTTCGCCACATTGCAGGAACTCAGAGTAGGTCACCTGACTGCATCATCATTGCCTTCAACGCCAGCAACAAAGGATTCATCCTCTT CTTCACAGGTAACCCCGCGAAACTCGGACCTCGTGACCCCTCCGGTTTGGAAACCCGAATTGAGTGCAGATGACTTGGCCATCAAACCCGAAGCAGATCA AGTTGATAGCTTAACCAATAGGAGACTGTCATGGCCACCATCAGTTAAACAGTGA
AA sequence Show only first row Show all	>Lus10035310 pacid=23170629 polypeptide=Lus10035310 locus=Lus10035310.g ID=Lus10035310.BGIv1.0 annot-version=v1.0 MSMGSDTTWVGKKPLRRIGGMSDALSIAADLGYSVAPPPSQEEVQNLSSSTGEKGDDLIRVLRELTAVQRKTADLQVELQGRKDDKNVAHLTHVSEMEKK IETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVSDFQWTQNFRESPSVWGEMLRPIPVALASCTRFFEAMS AMRESFATLQELRVGHLTASSLPSTPATKDSSSSSQVTPRNSDLVTPPVWKPELSADDLAIKPEADQVDSLTNRRLSWPPSVKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32980			unknown protein		Lus10035310 [exp]	0	1
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10036073 [exp]	2.4	0.6772
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	4.0	0.6961
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	9.9	0.6527
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	12.0	0.6907
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	17.9	0.6238
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	30.2	0.6371
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10034299 [exp]	31.4	0.6604
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	32.5	0.6128
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	34.7	0.6272
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	35.1	0.6390

Compare expression of checked genes

Lus10035310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.