Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05755 397 / 8e-137 Nodulin MtN21 /EamA-like transporter family protein (.1) AT2G05753 56 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030012 [exp] 545 / 0 AT2G05755 251 / 7e-118 Nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157700 [exp] 448 / 4e-157 AT2G05755 462 / 1e-162 Nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10035313 pacid=23170581 polypeptide=Lus10035313 locus=Lus10035313.g ID=Lus10035313.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCCTCTACGGAGATCAGCGACGGGGATAGCGCTGTGGAGCTGGTCGTCTGCGACGTGCCTGCATTGTCTTCTACCGAATCTAACGGTGACG CCGCTGGCGATGCTGTTGAGTCGGAGGAGATCGCTCCACTGTTGAAGCAGCAGGCTGAACGGCCCAAGATCAACATCTTCTCCGTCTCTTACTCTCGCCG GAAACCTAGGGAACATGCGATCAGGCTACCTGAATCCGATGCTCAAGTATCACAATTGATTCTATGGCTGTGGGGTGGGTCAAGATACTCCGGTATGCTG TGTGTAGCTGTATCGTCGGCCATTTACTTCTCTATGGAGCTTCTTTCTGATGTTTTTTCTGCTCAGTCGATCCCGTTATTTGAGACTGCATTTGCGAGGT GTACAGTACTCTTGGTTCTGTCTTATTTGTGGTTGAGGAGAACTGGACAACCTATGTTTGGACCAGCACATGCCAGGAAACTTCTTATTTTAAGAGCCCT GATGGGATTTTTGTCCCTACTGAGCTTTATATACTGTGTTCAACGATTGCCCTTGTCTCAAGCTATCGTACTATGTTTCACGACTCCCATTATGGCTTCA ATCGTGGCAAGAATTGCATTTCATGAAAAGTTGAAAATCGCTGACATAGGAGGTCTTGCTTGCAACTTCTTTGGCGTGCTCTTTATTTTCAGACAGAGCT TCACTGCACAAGGTGAGCCAGTTGGAAATGGTTCAGAAGGCAACACCGGTTTGAATGGGTTCCATTATGCATATGCAATATTAGCTGGTCTGATATCGTC CATCACTAGTGGAGTCAGTTACTGCCTTATAAGGGCTGGATCTAAGGCCTGTGATCAGCCTGTGACCACCGTATTTTCATTTGGCATTCTTGCTGCCCCG TCAGCTCTAGTGTGCATGTTCATTTTCGAGGATCTTGTGTTGCCAGAAATTAGCTCCCTCTTCCTTATGCTTCTACTCGGAGGTCTGGCCTTCTTAGCTG AGGTGTTCTTAGCTCGCGGCCTACAGCTTGAGAAAACCAGCAAAGCTGCAAACTTTCAATACCTCGCGGCTGCATTCACAGAGCTGTGGGGTATCGCTTC CTCTACAATACTTGCCTCGTTCGGGGGACTAATCGGCTGTTTACTCATCTTAGGTTCGATCGGCTGTACCATATACATTGGCCCTGATAAAGACATAGAA TGA
AA sequence Show only first row Show all	>Lus10035313 pacid=23170581 polypeptide=Lus10035313 locus=Lus10035313.g ID=Lus10035313.BGIv1.0 annot-version=v1.0 MAASSTEISDGDSAVELVVCDVPALSSTESNGDAAGDAVESEEIAPLLKQQAERPKINIFSVSYSRRKPREHAIRLPESDAQVSQLILWLWGGSRYSGML CVAVSSAIYFSMELLSDVFSAQSIPLFETAFARCTVLLVLSYLWLRRTGQPMFGPAHARKLLILRALMGFLSLLSFIYCVQRLPLSQAIVLCFTTPIMAS IVARIAFHEKLKIADIGGLACNFFGVLFIFRQSFTAQGEPVGNGSEGNTGLNGFHYAYAILAGLISSITSGVSYCLIRAGSKACDQPVTTVFSFGILAAP SALVCMFIFEDLVLPEISSLFLMLLLGGLAFLAEVFLARGLQLEKTSKAANFQYLAAAFTELWGIASSTILASFGGLIGCLLILGSIGCTIYIGPDKDIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	0	1
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	3.7	0.8118
AT5G18310			unknown protein		Lus10021984 [exp]	8.5	0.7057
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	9.7	0.8156
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	10.7	0.7877
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	11.4	0.7900
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	12.8	0.7952
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	15.5	0.7800
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	18.4	0.7801
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	18.7	0.7932
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	20.8	0.7837

Compare expression of checked genes

Lus10035313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.