Plant FIBer expression Database

Lus10035314 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29070 258 / 4e-87 Phospholipase A2 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030011
[exp]
412 / 4e-148 AT4G29070 264 / 6e-89 Phospholipase A2 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G275300
[exp]
292 / 1e-100 AT4G29070 290 / 4e-99 Phospholipase A2 family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10035314 pacid=23170510 polypeptide=Lus10035314 locus=Lus10035314.g ID=Lus10035314.BGIv1.0 annot-version=v1.0
ATGGCTGTTACGTCGTCCAATGGCGTGACAGAACAGCATCAAAAGAGGAGCGGCAGGGGTTTTGGTTTCGGTTTCAGGCTATGGGGATGGTCTCTCTTTT
CGATCATACCGTTGGCGATCACTTCCGATCATAAGATGGAAAGACCAACTACCATAAACAGAAAGTTGAAGAGGCGTGGCGGCCAGTATCCTACTGATCA
AGTTGTTTACAGTGGCGGTATTAGGGGTAGTAATAATAACCCCCTGCGATTTAGACCTTATGTATCCAAGGTTCCATGGCATACAGGGCCAAGAGCCTTC
CTTTCTCAGCTTTTCCCCCGCTATGGGCACTACTGTGGCCCTAACTGGTCGAGCGGGAAAGACCAGGGCTCTCTCCTATGGGACAAGCGGCCAATTGATT
GGTTGGATTATTGCTGCTACTGCCATGATATGGGTTACGACACTCACGATCAAGCTGAGCTTTTGAAGGCTGACTTGAAGTTTCTTGAATGCTTGGAGAG
ACCTTATATGGTGACCAGAGGCGACTCTCATGTCGCTCATATTTACAAGACCATGTCCATCACAGGACTGAAGAATATACTGATACCGTACAGGACACAC
GTTGTGAAGCTGCAATCTGGGTTTCCTGAAATAAATTTTGGATGGTTGAGCAATGTGAGCTTTAGAGGGTGGAAATTCTGCAGAATACAAGGTAGCCAGC
AGTAG
AA sequence
>Lus10035314 pacid=23170510 polypeptide=Lus10035314 locus=Lus10035314.g ID=Lus10035314.BGIv1.0 annot-version=v1.0
MAVTSSNGVTEQHQKRSGRGFGFGFRLWGWSLFSIIPLAITSDHKMERPTTINRKLKRRGGQYPTDQVVYSGGIRGSNNNPLRFRPYVSKVPWHTGPRAF
LSQLFPRYGHYCGPNWSSGKDQGSLLWDKRPIDWLDYCCYCHDMGYDTHDQAELLKADLKFLECLERPYMVTRGDSHVAHIYKTMSITGLKNILIPYRTH
VVKLQSGFPEINFGWLSNVSFRGWKFCRIQGSQQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G29070 Phospholipase A2 family protei... Lus10035314
[exp]
0 1
AT4G38060 unknown protein Lus10032845
[exp]
1.7 0.8840
AT1G76570 Chlorophyll A-B binding family... Lus10015235
[exp]
2.0 0.8736
AT4G27130 Translation initiation factor ... Lus10031550
[exp]
2.4 0.8552
AT2G27830 unknown protein Lus10020544
[exp]
3.9 0.8057
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Lus10015014
[exp]
4.0 0.8050
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10025201
[exp]
5.7 0.8463
AT4G29070 Phospholipase A2 family protei... Lus10030011
[exp]
7.5 0.7853
AT3G18430 Calcium-binding EF-hand family... Lus10022173
[exp]
9.4 0.8206
AT4G11600 LSC803, PHGPX, ... glutathione peroxidase 6 (.1) Lus10000603
[exp]
10.6 0.8073
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Lus10015742
[exp]
11.5 0.7317

Lus10035314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.