Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05030 673 / 0 Major facilitator superfamily protein (.1) AT1G67300 381 / 2e-127 Major facilitator superfamily protein (.1.2) AT5G16150 360 / 2e-118 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G79820 358 / 2e-118 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT3G18830 194 / 5e-55 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 186 / 2e-52 AtPLT4 Major facilitator superfamily protein (.1) AT1G19450 177 / 3e-49 Major facilitator superfamily protein (.1) AT1G75220 173 / 8e-48 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT3G05150 169 / 1e-46 Major facilitator superfamily protein (.1) AT5G59250 169 / 5e-46 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030010 [exp] 950 / 0 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10028486 [exp] 360 / 3e-118 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 359 / 5e-118 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 352 / 3e-115 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 343 / 2e-111 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10034930 [exp] 325 / 2e-105 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10018581 [exp] 191 / 7e-54 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10035255 [exp] 187 / 7e-53 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 184 / 2e-51 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060800 [exp] 717 / 0 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.018G083200 [exp] 362 / 5e-120 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G097800 [exp] 356 / 1e-116 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.001G185300 [exp] 346 / 5e-114 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.017G116400 [exp] 290 / 7e-94 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.007G024300 [exp] 187 / 3e-53 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 187 / 9e-53 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 179 / 9e-50 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 172 / 2e-47 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 165 / 1e-44 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10035315 pacid=23170617 polypeptide=Lus10035315 locus=Lus10035315.g ID=Lus10035315.BGIv1.0 annot-version=v1.0 ATGTCGATGACTACTATAATATCTCCGCCGCTTCCTTTTCCGGCGATCGTCGGGTCGACGCAGCTCCGGAGACGGACCCACTTCCGTTTCCGAATCTCGT TATCCCCGACGCCGTTTAGAGTTTCGGCGGTGAAGTACGATGACAGACAAAATCCAGAGATTGAGAAGGTATCGACGGAGAGAAATAGTGGAGAGACTTC GAGTCCGAATCCTGGATGGATTCGTGCTTTCCCTCATGTGCTCACGGCTTCAATGTCCAATTTCCTGTTTGGCTATCAGATTGGAGTAATGAATGGACCT ATTGTCTCTGTTGCTCGGGAGCTGGGGTTTGAAGGGAATCCGATCCTCGAAGGGCTTGTTGTCAGCATATTTATAGCTGGTGCGTTTTTTGGAAGCATTG GATGCGGTTCGCTGGCTGATAAACTTGGATGTCGACGGACATTTCAGGTTGCTACTGTACCATTGATTCTCGGTGCAATGATAAGCGATCTGATACTTTT CGAAATGGACAGTGCACAATCACACTCGTTGGAAGAAGTACTCGGAGGACGATTTCTGGTTGGCCTTGGGATCGGGGTGAACACAGTTCTTGTTCCAATC TATATATCAGAGGTTTCTCCCACACAATTTAGAGGTTCCCTGGGAACCTTCTCTCAGATTGGCACATGCTCCGGTATCATTGCAGCTTTGTTACTTGGAA TTCCTTCCGATAACGATCCCCACTGGTGGAGGGCGATGTTATATGCTGCTAGTCTTCCTGGAATTTTGCTTGCTTTGGGTATGCAGTTTGCTGTAGACAG CCCTCGTTGGCTGTATAAAGCTGGGAAAATAGACAATGCAAAAGAAGTTATCTCTAACCTTTGGGGACCGAGTGAAGTTGACAAGGCAATTGAAGAAATC CAATCAGTCGTTAAGAGTGATAGCAGTGATGCGGCCGGTACATGGTTGGAATTGTTGGAGCAACCACACTCTCGAGTTGCATTTGTTGGAGGCTCGCTTT TCTTATTGCAACAGTTTGCCGGTATAAATGGAGTCCTTTACTTTTCATCCTTGACATTCAAGGATGTTGGTATAACAAGTAGCGTCTTACCTAGCATATT CATTGGAATCGTCAACTTTGCAGGTGCACTTTCTGCTTTATACTTGATTGATAAGGAAGGAAGGAAGAAGCTATTAATCGGCAGTTACATTGGAATGGCA CTCTCGATGTTTCTCGTAGCAGGTGCTATAACTCTGCCACTAGACGAAGAAGTTGGTCACATCACGTCCATATTAGGAACTCTCATGTACATATACACCT TTGCAATTGGAGCGGGTCCAGTCACCGGTATGATCATACCAGAGCTCAGCAGCTCCAGGACTCGAGGGACGATCATGGGATTCAGTCTCTCAGTTCACTG GGTCTGCAACTTCGTGGTGGGTCTGTTATTTCTGGACATGGTGAAGACCTTTGGAGTTGCACCCGTTTATACTGCATTCGGCGCTGTATCGCTCTTATCG GCCGTATTCGCGTACTACTTCACCGTCGAAACTAAAGGCCGCTCCCTGGAGGAGATTGAAATGTCCCTGAAAAGAAAAGGCTAG
AA sequence Show only first row Show all	>Lus10035315 pacid=23170617 polypeptide=Lus10035315 locus=Lus10035315.g ID=Lus10035315.BGIv1.0 annot-version=v1.0 MSMTTIISPPLPFPAIVGSTQLRRRTHFRFRISLSPTPFRVSAVKYDDRQNPEIEKVSTERNSGETSSPNPGWIRAFPHVLTASMSNFLFGYQIGVMNGP IVSVARELGFEGNPILEGLVVSIFIAGAFFGSIGCGSLADKLGCRRTFQVATVPLILGAMISDLILFEMDSAQSHSLEEVLGGRFLVGLGIGVNTVLVPI YISEVSPTQFRGSLGTFSQIGTCSGIIAALLLGIPSDNDPHWWRAMLYAASLPGILLALGMQFAVDSPRWLYKAGKIDNAKEVISNLWGPSEVDKAIEEI QSVVKSDSSDAAGTWLELLEQPHSRVAFVGGSLFLLQQFAGINGVLYFSSLTFKDVGITSSVLPSIFIGIVNFAGALSALYLIDKEGRKKLLIGSYIGMA LSMFLVAGAITLPLDEEVGHITSILGTLMYIYTFAIGAGPVTGMIIPELSSSRTRGTIMGFSLSVHWVCNFVVGLLFLDMVKTFGVAPVYTAFGAVSLLS AVFAYYFTVETKGRSLEEIEMSLKRKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	1.4	0.9651
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	2.8	0.9639
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	5.0	0.9462
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	7.5	0.9399
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033337 [exp]	8.9	0.9399
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	9.3	0.9570
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	10.0	0.9198
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	10.2	0.9529
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	17.2	0.9237
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	17.6	0.9273

Compare expression of checked genes

Lus10035315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.