Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 716 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 581 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 577 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 485 / 3e-166 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 451 / 7e-155 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 440 / 1e-150 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44560 427 / 1e-145 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44570 422 / 1e-143 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT1G70710 418 / 6e-142 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT4G02290 413 / 7e-140 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009724 [exp] 640 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10001833 [exp] 581 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 577 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 567 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 554 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 523 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 482 / 2e-165 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10030007 [exp] 443 / 1e-155 AT2G32990 330 / 2e-111 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 436 / 9e-149 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157600 [exp] 759 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 673 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 581 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 577 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 522 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.002G225200 [exp] 462 / 3e-162 AT2G32990 465 / 2e-163 glycosyl hydrolase 9B8 (.1) Potri.002G202400 [exp] 416 / 5e-141 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 414 / 3e-140 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.010G109200 [exp] 410 / 7e-139 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G127900 [exp] 410 / 1e-138 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10035316 pacid=23170660 polypeptide=Lus10035316 locus=Lus10035316.g ID=Lus10035316.BGIv1.0 annot-version=v1.0 ATGGACAACCACAGAAGAGCTCTATCCCTCTTCATCCTCCTCCTCACACTCCTCTCTCCAATCTCCTCCACTTTCGACTACGCCGACGCATTGTCCAAGA GCCTCCTCTACTTCGAATCCCAGCGCTCCGGCCGCCTCCCGTACAACCAGCGTGTCTCCTGGCGCGACCATCCCGGCCTCACCGAAGGCACACAGCAATC ACCGACGGCCTCGAGCAAGGCGTCAGTGGATTTGGTCGGTGGGTATTACGACGCCGGTGACCAGGTGAAATTCGGCCTCCCGATGGCCTTCACCGTGACA ATGCTGTCGTGGGGAGTGTTGGAATCCGGAGAACAGATTGCCACCGCCGGCGAATTGCAGCATGCTCTTGAAGCCATCAAATGGGGCACTGATTACTTCA TCAAGGCTCACACCAGCCCTAACGTTCTCTGGGCAGAGGTGGGAGATGGAGACACAGACCATTACTGCTGGCAGAGGCCAGAGGACATGACGACGTCACG GCGAGCCTACAGAATCGACGAGAACAACCCAGGATCGGATCTCGCCGGCGAAACAGCAGCCGCGATGGCCGCCGCGTCGATGGTGTTCAGGAAAACCAAC CCGCATTACTCCCACTTGCTTCTTCACCATGCCCAACAGTTGTTCGAGTTCGGCGACAAATTCAGGGGTAAATACGACTCGAGCGTGGGGGTAGTGAAGG GATACTACGCATCGGTGAGCGGGTTCATGGACGAGTTACTGTGGGGGGCAATGTGGCTGTACAGAGCGACCGACAAGGAAGAGTATTTGGAGTATGTGAT TAAGAATGCGGAAGGATTCGGTGGGATTGGTTGGGCCATGACGGAGTTCAGCTGGGATGTTAAGTATGCTGGCATTCAAATCATGGCTTCAAAGTTACTT ACAGAGGCAAAGCACAAGCCACACAGCGAAACACTCCACCAGTACAAATCAAAAGCAGAGTTCTACCTATGCTCACTCCTCAACAAGAACAACTCCACCA ATTCCAACGTAATCCACACCCCAGGAGGACTCATCTACGTAAGGGAATGGAACAACATGCAGCACGTATCAACAGCATCTTTCCTCATGACATACTACTC CGACTTCCTCCTCGAATCGGGCCAGCTCACCCTGGACTGCCACCTAGGATCCGTGACCCACCACGAACTCCTCTCGTTCGCCAAGTCGCAAGTGGACTAC ATCCTAGGCTCGAACCCAATGAACATGAGCTACCTTGTAGGGTATGGGTCGAACTACCCTAGGAGGGTCCACCACCGAGGGGCTTCGATCATGTCCTACA GGGAGCAGCGAGGGTTCATCGGGTGCACCCAGGGGTACGATGATTGGTACGGTAAGGACGAGCCCAACCCTAACTTGCTCGTTGGGGCTCTGGTCGGCGG TCCGGATTTCGAGGATAAGTTTGTTGATAGTAGGGATAATTTCATGCAGACCGAGGCTTGTACTTATAATACTGCTCCCTTGGTTGGTGTTTTTGCTAAG TTTCTAGGGTTGGAGGAGGATGAGTTTGATGATGACAAAATGTTGGTTGCTTCTATATAG
AA sequence Show only first row Show all	>Lus10035316 pacid=23170660 polypeptide=Lus10035316 locus=Lus10035316.g ID=Lus10035316.BGIv1.0 annot-version=v1.0 MDNHRRALSLFILLLTLLSPISSTFDYADALSKSLLYFESQRSGRLPYNQRVSWRDHPGLTEGTQQSPTASSKASVDLVGGYYDAGDQVKFGLPMAFTVT MLSWGVLESGEQIATAGELQHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAYRIDENNPGSDLAGETAAAMAAASMVFRKTN PHYSHLLLHHAQQLFEFGDKFRGKYDSSVGVVKGYYASVSGFMDELLWGAMWLYRATDKEEYLEYVIKNAEGFGGIGWAMTEFSWDVKYAGIQIMASKLL TEAKHKPHSETLHQYKSKAEFYLCSLLNKNNSTNSNVIHTPGGLIYVREWNNMQHVSTASFLMTYYSDFLLESGQLTLDCHLGSVTHHELLSFAKSQVDY ILGSNPMNMSYLVGYGSNYPRRVHHRGASIMSYREQRGFIGCTQGYDDWYGKDEPNPNLLVGALVGGPDFEDKFVDSRDNFMQTEACTYNTAPLVGVFAK FLGLEEDEFDDDKMLVASI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10035316 [exp]	0	1
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	4.5	0.8314
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	5.7	0.8364
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	9.8	0.7678
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	10.4	0.7821
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	12.8	0.8135
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	15.4	0.7255
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	17.2	0.7808
AT3G07210			unknown protein		Lus10038194 [exp]	22.1	0.7693
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	24.5	0.7365
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	25.7	0.7630

Compare expression of checked genes

Lus10035316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.