Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21670 637 / 0 Major facilitator superfamily protein (.1) AT2G26690 412 / 7e-138 Major facilitator superfamily protein (.1) AT1G12110 408 / 4e-136 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT3G54140 331 / 1e-106 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 326 / 2e-104 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 315 / 4e-100 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 312 / 5e-99 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G33440 301 / 2e-94 Major facilitator superfamily protein (.1) AT1G59740 298 / 2e-93 Major facilitator superfamily protein (.1) AT1G68570 277 / 2e-85 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030006 [exp] 886 / 0 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 443 / 8e-150 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 413 / 3e-138 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10030081 [exp] 408 / 1e-135 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10039782 [exp] 402 / 1e-133 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10018553 [exp] 399 / 2e-132 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 332 / 1e-106 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 332 / 3e-106 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 327 / 1e-104 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157500 [exp] 693 / 0 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.002G225500 [exp] 656 / 0 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 438 / 8e-148 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.010G100200 [exp] 336 / 3e-108 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.005G233500 [exp] 328 / 7e-105 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 324 / 7e-104 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 321 / 1e-102 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 320 / 5e-102 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 311 / 6e-99 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 307 / 7e-97 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10035317 pacid=23170578 polypeptide=Lus10035317 locus=Lus10035317.g ID=Lus10035317.BGIv1.0 annot-version=v1.0 ATGGTTTTGGTGGCAGAGGAAGGAGATGGTGGTGGAGGAGATGCAGCAGTGGATTACAGAGGAAACCCGGCTGATAAGTCCAAGACTGGTGGCTGGCTTG CTGCTGCCTTGATTCTAGGAACTGAGCTCTCAGAGAGGATATGTGTGATGGGGATATCAATGAACCTTGTGACATACTTGGTTTCCGATTTGCACATCCC AGCGGCGAAATCGGCCACCATCGTTACCAACTTCATGGGGACTCTCAACTTGCTTGGCCTCCTTGGTGGGTTCTTGGCTGATGCCAAGCTTGGCCGTTAC TTAACTGTTGCCATCTTTGCCTCCATCACAGCTTTGGGAGTCACACTCCTAACACTAGCAACAAGCATCCCAGTCATGCGCCCACCACAATGCGACAACT CCCGCCGGCATCCCCTCCTTTGCATTGAAGCCAACGGAAAGCAACTCGCCCTCCTCTACGCTGCACTCTACACCACCGCGTTAGGCGGCGGAGGTATAAA ATCCAACGTGTCCGGTTTCGGGTCGGACCAGTTCGACTCGTCCGACCCAAAGGAAGAGAAGTCGATGGTGTTCTTCTTCAACAGGTTCTACTTCTGCATA AGCCTCGGCTCTCTCTTTGCTGTGATCGTGCTCGTCTACATCCAGGACAATATAGGCAGAGGGTGGGGGTACGGGATATCGGCTGCCACGATGGTGGTGG CGGTGGTGGTTCTGGTCGTCGGTACGAGGTTGTACCGGTACAAGAAGCCGAAGGGGAGTCCAGTGACGGTTATCTCGAGGGTTGTGTTCTTGGCTTGGAA GAAGAGGAAGGTTGATTACCCTAAGGATGTGAGTGAGTTGAATGGGTACCGTGAATCCAGAGTTCAGCATACTGACAAGTTCAAGTGTCTAGACAAGGCA GCGATAGTAGACGAAACCTCGAGTGACAACAAGAACGACCCATGGATAGTCTCACAACTAACGGAGGTCGAAGAGCTCAAAATGGTGTTGAGACTCATCC CAATCTGGTCGACCGGCATCCTCTTCTGGACAGTCTACTCACAGATGACAACCTTCACAGTCGAACAAGCCACTTCCATGAACCGAAAACTCGGCTCCAT AACGATCCCCGCAGGCTCCTTCTCCACGGTCTTGTTCATCACAATCCTCCTCTTCACCTCCTTGAACGAGAAGCTCTTCGTCCCCATCGGGCGGAAGCTC ACCCGCAACCCTCAGGGGATAACCAGCCTTCAGAGGATTGGGATCGGCCTCCTGTTCTCGATCCTCGCCATGGTTGCAGCTGCGGTGATCGAGAAAGCTC GCAGGCACAACGCAAACGAGGATGGGGTTCAAATCAGCGCGTTCTGGCTCGTGCCGCAGTTCTTCCTGGTGGGTGCGGGCGAGGCGTTCGCCTACGTGGG GCAGCTGGAGTTCTTCATAAGGGAGGCCCCGGAGAAGATGAAGTCGATGAGTACCGGGTTGTTTCTTAGCACCATCTCGATGGGGTTCTTCGTCAGTAGC TTGCTGGTCTCGGTCGTCGACAAGGTGACTCATAAAGTCTGGCTCAGGAGCGATTTGAACAGCGGGAAGCTGAATAATTTCTACTGGCTGCTTGCTGTTT TGGGCCTGGTGAACTTTGTGGTGTTCTTAGTTGTTGCTAGCCGACATCAGTATAAGGTGAGGAATGGTGGTGAAACTGAGATTAAGGATGATGTTACTAC TATGGTTGTAGAAATGGAGTAG
AA sequence Show only first row Show all	>Lus10035317 pacid=23170578 polypeptide=Lus10035317 locus=Lus10035317.g ID=Lus10035317.BGIv1.0 annot-version=v1.0 MVLVAEEGDGGGGDAAVDYRGNPADKSKTGGWLAAALILGTELSERICVMGISMNLVTYLVSDLHIPAAKSATIVTNFMGTLNLLGLLGGFLADAKLGRY LTVAIFASITALGVTLLTLATSIPVMRPPQCDNSRRHPLLCIEANGKQLALLYAALYTTALGGGGIKSNVSGFGSDQFDSSDPKEEKSMVFFFNRFYFCI SLGSLFAVIVLVYIQDNIGRGWGYGISAATMVVAVVVLVVGTRLYRYKKPKGSPVTVISRVVFLAWKKRKVDYPKDVSELNGYRESRVQHTDKFKCLDKA AIVDETSSDNKNDPWIVSQLTEVEELKMVLRLIPIWSTGILFWTVYSQMTTFTVEQATSMNRKLGSITIPAGSFSTVLFITILLFTSLNEKLFVPIGRKL TRNPQGITSLQRIGIGLLFSILAMVAAAVIEKARRHNANEDGVQISAFWLVPQFFLVGAGEAFAYVGQLEFFIREAPEKMKSMSTGLFLSTISMGFFVSS LLVSVVDKVTHKVWLRSDLNSGKLNNFYWLLAVLGLVNFVVFLVVASRHQYKVRNGGETEIKDDVTTMVVEME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	2.8	0.9437
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	2.8	0.9320
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	3.7	0.9367
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	3.7	0.9218
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	3.9	0.9235
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	6.0	0.9336
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	6.0	0.9223
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	6.6	0.9135
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	7.3	0.9015
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	9.4	0.9159

Compare expression of checked genes

Lus10035317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.