Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15410 358 / 2e-120 PUX5, ATB' GAMMA, ATB'GAMMA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) AT4G04210 303 / 2e-100 PUX4 plant UBX domain containing protein 4 (.1) AT4G22150 283 / 7e-92 PUX3 plant UBX domain-containing protein 3 (.1) AT3G21660 154 / 9e-42 UBX domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030005 [exp] 660 / 0 AT4G15410 407 / 6e-140 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10031535 [exp] 388 / 5e-132 AT4G15410 353 / 2e-119 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Lus10015145 [exp] 175 / 7e-17 AT4G15410 184 / 1e-81 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225800 [exp] 377 / 1e-127 AT4G15410 362 / 2e-122 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (.1) Potri.011G011300 [exp] 329 / 8e-111 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.006G270300 [exp] 329 / 8e-111 AT4G04210 420 / 5e-149 plant UBX domain containing protein 4 (.1) Potri.014G157200 [exp] 329 / 2e-109 AT4G04210 329 / 1e-111 plant UBX domain containing protein 4 (.1) Potri.004G004200 [exp] 321 / 1e-107 AT4G22150 404 / 2e-141 plant UBX domain-containing protein 3 (.1) Potri.011G005000 [exp] 295 / 3e-98 AT4G04210 358 / 3e-125 plant UBX domain containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08059 [flax] [poplar] SEP SEP domain CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10035318 pacid=23170667 polypeptide=Lus10035318 locus=Lus10035318.g ID=Lus10035318.BGIv1.0 annot-version=v1.0 ATGGAAGCCGCCGGCGGGAAGCTCGATCTCAACGACATGGACAACTCCGCGCTGGTCGATTCCTTCTGCGAGATCACCTCCTCGACCAGAGAAGAGGCCG CTTTCTACTTGGAGAGCCACCAGTGGGATCTCGACTCCGCTGTCTCGACTTTCCTCGACAACGATAACGCCTCCGCCGCCGTAGTCGCAGCAGCGGCGGA GACTTCTGCTGGTGCTGACGCTCCTGTTCTCGACACTCCGTCTCCGACGGATTCTCCCGGTGAATCTCTGTCCCCTGATTACTCTCCCTCGCAGTCTCCT TCTAGGTCTAGGTCGCGATCGTCGTCTCCTGCTCCCGCGACGGTGTCTAGGGTTTCTAGGTTACCGTACAGGCTGAGATCGAGGGGGGCGGATGATGATA ATAAGAAGAATAAGAAGCCACGGACTGATGATGGTAGTGGTACCAGTAGGAGTGGGAATCGCCGTGGAATTACGACGTTATCTGATCTCAATCGAGCGCC CGCTGGTTCTGATACTGATGATGAAGACGACGACGAGCCGCAGGAGTATTATACCGGTGGCCAAAAGAGCGGAATGCTGGTCCAAGATCCTAAGAAGAAG TTTGACGCAGATGCCATCTTCGATCAGGCTAGAAATTCAGGAGCTGTTCATAGGCCTGAGGATTCCGCTAGGGCTTCTTCAGCTTCAAGGAGTTTTGCTG GAACTGGGAGATTACTCTCTGGAGAGACGGTTCAGGCTTCACCACAGCCGGTTGAGTTTGTCAATCATACAATCACCCTGTGGAGGAATGGCTTCACTGT CAATGATGGTCCTTTGAGGAGGTTGAATGATCCTGCTAATGCAGAGTTCCTGGAGAGCGTTAAGAAGTCCGAGTGTCCAACCGAGCTCGAACCAGAAGAC AGGAGAACCCAAGTCCATCTCAACCTCGTGCGCCGCGATGAAAACTACACAAAGCAGGAGCCACCGAAGAAGAAAGCGGCCTTCAAAGGCGTGGGAAGAA CATTAGCTGATGATGCATCGGCCTCCGAGCGACGACCCGTTCCTGATCCCTTAACGACTGCTCCAGTACCGTCGTCCGGCCTGACCGTAGATTCTTCGTC GCCAGAGACATCAATCCAGCTCCGGCTGGCAGATGGTACACGGATGGTCTCCCGCTTCAACCTGCACCACACCATTAGAGATGTCCGGGGATTCATCATG GCTTCGAGACCCGGTGAATCGCAGGATTTCCAGCTGCAGACCATGGGGTTCCCTCCGAAACAGCTCACCGATCCAGATCAGACGATACAGGATGCTGGGA TTGCGAATTCTGTTGTGATCCAGAAGCTCTTGGACCGGGTTTTTTTCTCGATTCGAAATGTTGATCTCAGTACTGGAATCTAA
AA sequence Show only first row Show all	>Lus10035318 pacid=23170667 polypeptide=Lus10035318 locus=Lus10035318.g ID=Lus10035318.BGIv1.0 annot-version=v1.0 MEAAGGKLDLNDMDNSALVDSFCEITSSTREEAAFYLESHQWDLDSAVSTFLDNDNASAAVVAAAAETSAGADAPVLDTPSPTDSPGESLSPDYSPSQSP SRSRSRSSSPAPATVSRVSRLPYRLRSRGADDDNKKNKKPRTDDGSGTSRSGNRRGITTLSDLNRAPAGSDTDDEDDDEPQEYYTGGQKSGMLVQDPKKK FDADAIFDQARNSGAVHRPEDSARASSASRSFAGTGRLLSGETVQASPQPVEFVNHTITLWRNGFTVNDGPLRRLNDPANAEFLESVKKSECPTELEPED RRTQVHLNLVRRDENYTKQEPPKKKAAFKGVGRTLADDASASERRPVPDPLTTAPVPSSGLTVDSSSPETSIQLRLADGTRMVSRFNLHHTIRDVRGFIM ASRPGESQDFQLQTMGFPPKQLTDPDQTIQDAGIANSVVIQKLLDRVFFSIRNVDLSTGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10035318 [exp]	0	1
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10011348 [exp]	1.4	0.6387
AT1G71140			MATE efflux family protein (.1...		Lus10006171 [exp]	20.0	0.5861
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	31.7	0.5871
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	32.6	0.5991
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	36.7	0.5748
AT2G48060			unknown protein		Lus10035352 [exp]	37.6	0.5768
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	61.1	0.5691
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	65.3	0.4913
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	95.5	0.5027
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10030938 [exp]	103.2	0.5036

Compare expression of checked genes

Lus10035318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.