Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23380 53 / 4e-08 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 52 / 1e-07 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT4G08150 51 / 2e-07 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 0 / 1 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042103 [exp] 54 / 5e-09 AT1G70510 125 / 1e-35 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) Lus10013037 [exp] 54 / 2e-08 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 54 / 2e-08 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 47 / 4e-06 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10030003 [exp] 0 / 1 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G011101 [exp] 71 / 5e-14 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.006G270401 [exp] 71 / 5e-14 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.015G079100 [exp] 53 / 4e-08 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 52 / 8e-08 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 51 / 1e-07 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.002G113300 [exp] 51 / 2e-07 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.010G043500 [exp] 49 / 7e-07 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 45 / 1e-05 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 44 / 5e-05 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.004G004700 [exp] 0 / 1 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03790 [flax] [poplar] KNOX1 KNOX1 domain
Representative CDS sequence Show only first row Show all	>Lus10035319 pacid=23170604 polypeptide=Lus10035319 locus=Lus10035319.g ID=Lus10035319.BGIv1.0 annot-version=v1.0 ATGGAGAGTGGTGGCCGCCGTACAGCAGTAGAAGCTTGTGGTGGTGGTGGAGTCCTAATGGGTTTCTCTAATCCTCTTCATAATGGGATTATGATGATTC ATCAGCAGCATCACTCTTCTAATTCTACACCTTCTTCTTCACCTTCTTCTTCTCATTCCTCCATGGACATGGTCACCAACAACAATCCATTGCCATCTCC TTATTATTTCATGGATTCCAACAACTTCATTAACACCTCCATTTCTGCCTCCTTACCACCCACAGATCCTCCTCCTCAGACTCAGACTCAGACAACTCTT CCTAATAACACTAATCTTTTTCCTCTTCCTCCAATTACTAACACTAGTACTACTAGTAGTGGTGTGTCAATGAGGGCTAAGATCATGTCTCATCCCCACT TCCCCCGCCTCCTCTCCGCCTTCTCCAATTGCCAAAAGGTTGGGGCGCCGGCGGAGGTGGTGGCGAGGCTGGAGGAGGTATGCGGCGGCGGATCAACCTC CGCCGCCGCCGCCATGATGCCGGGGGCTAGAACATCATCATTTGACATCATCATTAGGAGAAGACCCAGCACTGGATCAGTTCATGGAAGCATACTGCGA GATGCTAACAAAGTACGAGCAAGAGCTCTCAAAGCCATTCAAAGAAGCCTTGATCTTCCTCTCCAGGATCGAGTCCCAGTTCCGTGCCCTAACCACTAA
AA sequence Show only first row Show all	>Lus10035319 pacid=23170604 polypeptide=Lus10035319 locus=Lus10035319.g ID=Lus10035319.BGIv1.0 annot-version=v1.0 MESGGRRTAVEACGGGGVLMGFSNPLHNGIMMIHQQHHSSNSTPSSSPSSSHSSMDMVTNNNPLPSPYYFMDSNNFINTSISASLPPTDPPPQTQTQTTL PNNTNLFPLPPITNTSTTSSGVSMRAKIMSHPHFPRLLSAFSNCQKVGAPAEVVARLEEVCGGGSTSAAAAMMPGARTSSFDIIIRRRPSTGSVHGSILR DANKVRARALKAIQRSLDLPLQDRVPVPCPNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	1.0	0.9909
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	1.4	0.9613
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10007268 [exp]	2.4	0.9289
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	4.5	0.9155
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	4.5	0.8948
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10035600 [exp]	4.7	0.8945
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	4.9	0.8961
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	5.5	0.8471
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	6.0	0.8933
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	6.3	0.9058

Compare expression of checked genes

Lus10035319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.