Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62360 90 / 5e-23 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 71 / 5e-16 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G23380 55 / 3e-10 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G70510 53 / 1e-09 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030003 [exp] 132 / 7e-39 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 76 / 1e-17 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10007245 [exp] 72 / 1e-17 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10013037 [exp] 65 / 7e-14 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10029125 [exp] 65 / 7e-14 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10001238 [exp] 43 / 4e-06 AT1G23380 250 / 1e-80 KNOTTED1-like homeobox gene 6 (.1.2) Lus10042102 [exp] 39 / 9e-05 AT1G23380 155 / 3e-47 KNOTTED1-like homeobox gene 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G270401 [exp] 92 / 9e-24 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.011G011101 [exp] 92 / 9e-24 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.004G004700 [exp] 89 / 1e-22 AT1G62360 385 / 3e-133 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.002G113300 [exp] 76 / 9e-18 AT4G08150 421 / 7e-147 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Potri.012G087100 [exp] 66 / 3e-14 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.008G188700 [exp] 64 / 9e-14 AT1G23380 390 / 1e-136 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 62 / 8e-13 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 61 / 2e-12 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2) Potri.005G014200 [exp] 56 / 7e-11 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 52 / 3e-09 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10035320 pacid=23170540 polypeptide=Lus10035320 locus=Lus10035320.g ID=Lus10035320.BGIv1.0 annot-version=v1.0 ATGGCCAATGGTCGAAACGGGTCATCGGAGGAAGACATCGAAGCGATGGAGGCCACCTACATCGATCCGCAGGCGGAAGACAAGGAGCTCAAAGTGCAGC TACTCCGCAGGTACAGCGGATACCTAGGAAACCTGAAGCAAGAGTTCCTCAAGAAGAAGAAGAAAGGCAAGTTACCTAAGGAAGCCAGGCAGATGCTCCT CGAGTGGTGGAACCGTCACTACAAGTGGCCTTACCCTTCGGTAATTAACTCGTAG
AA sequence Show only first row Show all	>Lus10035320 pacid=23170540 polypeptide=Lus10035320 locus=Lus10035320.g ID=Lus10035320.BGIv1.0 annot-version=v1.0 MANGRNGSSEEDIEAMEATYIDPQAEDKELKVQLLRRYSGYLGNLKQEFLKKKKKGKLPKEARQMLLEWWNRHYKWPYPSVINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	0	1
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035319 [exp]	1.4	0.9613
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10030003 [exp]	2.0	0.9378
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017138 [exp]	2.4	0.8983
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	3.2	0.8938
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	6.9	0.8764
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	8.0	0.8977
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	8.4	0.8804
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10012363 [exp]	9.2	0.8314
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	9.5	0.8815
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10017535 [exp]	10.4	0.8358

Compare expression of checked genes

Lus10035320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.