Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15415 738 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 725 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 677 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 669 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 615 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 607 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G03470 599 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 579 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 530 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030002 [exp] 970 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 795 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 761 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 714 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10036926 [exp] 645 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 644 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 632 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 630 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10023920 [exp] 613 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157000 [exp] 795 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 776 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.017G070100 [exp] 721 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 716 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 714 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 686 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 686 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 614 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 601 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 583 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10035321 pacid=23170656 polypeptide=Lus10035321 locus=Lus10035321.g ID=Lus10035321.BGIv1.0 annot-version=v1.0 ATGATCAAGCAGATACTGGGGAAGCTACCTCGCAAGCCTTCGAAATCTTCGAGCAATGACTCGAGCAGTGATTTCAATGCTTATTCCTCTGTCAATTCTG GTTCTTCCGTAAACAGCAGCTCAAAGCCAGCTCCTTTGGCTTCTTCCAATGGTGTCATCAGTAAAGCGACACTGAATCGTGGCTCTTCTGGCGTTTACGA GCCATTGCCTAGCTTTAGGGATGTACCTAGTTCGGAGAAGCAGAATCTCTTCATCAAAAAGTTGCAAATGTGTTGTATTGTGTTTGATTTTAGTGACCCT AGCAAGCAGCTTAAGGAGAAAGACATAAAGCGGCAGACTTTACTTGAGCTTGTAGATTATGTTTCCTCTGTAACCATGAAGTTCAACGAGGTTGTGATGC AGGAGATGACCAAGATGGTAGCTTCCAATCTGTTTCGGACTCTCCCCGCCACGAATCGCGAGAATAAGATCTTGGAAATGTATGATATGGAAGAGGAAGA AACCGCAATGGAGCCTGCTTGGCCTCATTTACAGATAGTCTACGAGTTCCTGCTCCGTTTTGTGGCCTCCACCGAGACGGATGCCAAGCTTGCCAAGAGG TACGTCGACCATTCATTCGTGTTGAGGTTGCTCGACTTGTTTGATTCCGAGGATCAGAGGGAGAGGGAGTATCTGAAGACGATTTTGCATCGTGTTTACG GGAAATTCATGGTGCATAGGCCGTTTATTAGGAAGGCTATCAATAACATCTTCTACCGATTCGTGTTTGAAACCGAGAGGCATAATGGGATTGCTGAGTT ACTTGAGATACTGGGGAGTATTATTAACGGGTTTGCCTTGCCGTTGAAGGAAGAGCATAAGTTGTTTCTAGTTCGTGCGTTGATTCCGCTTCATAAGCCG AAATGTGTGTCCATGTACCATCAGCAATTGTCTTACTGCATAACCCAGTTTGTGGAGAAAGATGTCAAGCTTGCTGATACTGTGATTCGAGGTCTGTTGA AGTATTGGCCTGTTACGAATAGTACGAAAGAAGTGATGTTCCTTGGTGAGTTGGAGGAAGTGCTGGAATCTACTCAGGCGGCGGAGTTTCAGCGCTGCAT GGTCCCGTTGTTCCGACGGATCTCTTGCTGTCTCAGCAGTTCGCATTTTCAGGTGGCTGAACGTGCGTTGTTTCTGTGGAACAACGATCACATAAGAAAC TTAATCTTGCAGAACCAGAGAGTGATACTGCCAATAATCTTCCCAGCATTAGGAAAGAACGCCAGGGGTCACTGGAACCAAGCTGTTCAAAGCCTGACAC TCAACGTTAGAAAGATCTTCTCAGATTCCGACCCGGAATTCTTCGACGAATGCTTGGAGAAGTTCCAAGACGACGAGGCGAAGGAGATGGAGGCGCAGGA GAAACGACAAGTAATGTGGAAGCGATTGGAAGACGCTGCAGCCTCTAAAGATCCATCCTCGCTCGTCTCAAGATTCGCAACCTCCGTTGCCATTCCCAGG GGAACAAGGAGTTCCAATGGCGGCTGA
AA sequence Show only first row Show all	>Lus10035321 pacid=23170656 polypeptide=Lus10035321 locus=Lus10035321.g ID=Lus10035321.BGIv1.0 annot-version=v1.0 MIKQILGKLPRKPSKSSSNDSSSDFNAYSSVNSGSSVNSSSKPAPLASSNGVISKATLNRGSSGVYEPLPSFRDVPSSEKQNLFIKKLQMCCIVFDFSDP SKQLKEKDIKRQTLLELVDYVSSVTMKFNEVVMQEMTKMVASNLFRTLPATNRENKILEMYDMEEEETAMEPAWPHLQIVYEFLLRFVASTETDAKLAKR YVDHSFVLRLLDLFDSEDQREREYLKTILHRVYGKFMVHRPFIRKAINNIFYRFVFETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKP KCVSMYHQQLSYCITQFVEKDVKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQAAEFQRCMVPLFRRISCCLSSSHFQVAERALFLWNNDHIRN LILQNQRVILPIIFPALGKNARGHWNQAVQSLTLNVRKIFSDSDPEFFDECLEKFQDDEAKEMEAQEKRQVMWKRLEDAAASKDPSSLVSRFATSVAIPR GTRSSNGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10035321 [exp]	0	1
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10016053 [exp]	6.5	0.6749
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10042965 [exp]	10.4	0.6882
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	20.0	0.6922
AT3G15630			unknown protein		Lus10017768 [exp]	32.2	0.6554
AT1G42430			unknown protein		Lus10021819 [exp]	37.5	0.6582
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10012992 [exp]	39.0	0.6403
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	78.5	0.6320
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	106.9	0.6024
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	108.1	0.6123
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10024798 [exp]	131.5	0.5667

Compare expression of checked genes

Lus10035321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.