Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51040 115 / 1e-29 RTH RTE1-homolog (.1.2.3) AT5G03100 50 / 2e-06 F-box/RNI-like superfamily protein (.1) AT5G22720 50 / 2e-06 F-box/RNI-like superfamily protein (.1.2) AT2G32970 47 / 3e-05 unknown protein AT3G59150 43 / 0.0005 F-box/RNI-like superfamily protein (.1) AT2G26070 0 / 1 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035308 [exp] 155 / 1e-44 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10030016 [exp] 149 / 1e-38 AT2G32970 799 / 0.0 unknown protein Lus10027471 [exp] 124 / 2e-31 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028350 [exp] 115 / 1e-29 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10041800 [exp] 114 / 5e-29 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10037440 [exp] 99 / 5e-22 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 92 / 1e-20 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10035326 [exp] 87 / 1e-19 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10018543 [exp] 80 / 1e-15 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017900 [exp] 120 / 2e-31 AT3G51040 280 / 5e-96 RTE1-homolog (.1.2.3) Potri.011G104300 [exp] 58 / 7e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.014G158200 [exp] 51 / 1e-06 AT2G32970 797 / 0.0 unknown protein Potri.011G104100 [exp] 50 / 2e-06 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.002G224900 [exp] 48 / 1e-05 AT2G32970 772 / 0.0 unknown protein Potri.011G104200 [exp] 46 / 3e-05 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 42 / 0.0006 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.018G053900 [exp] 0 / 1 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.006G229900 [exp] 0 / 1 AT2G26070 360 / 3e-127 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [flax] [poplar] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Lus10035322 pacid=23170480 polypeptide=Lus10035322 locus=Lus10035322.g ID=Lus10035322.BGIv1.0 annot-version=v1.0 ATGGATATAAAAGGAGCTTATGATATTGAGCAAGTGAGCTTAAAATCGGGAATTGAGCATGAGCTGTGGCCTCTTGAGGAGAGTGATCCAAAGAAGGCAA GATTTCCATGCTGTCTGGTTTGGACTCCACTTCCTGTTGTATCATGGTTGGCGCCTTTTATGGGACATGTGGGCATTTGCAGAGAGGATGGAGCTATTTT AGACTTCTCAGGATCTAATCTTGTCTCTCATGACAATTTTGCGTATGGTGCTGCCGCAAGATACCTTCAGCTAGATAGAGACCAGGCATGTTATGCTTTC TATCTCTCTCTGTCAGCACTGTTTCTTTCTGAACCGTGGGGGTCATACATGCAAGCACGGGTTTATGCACACGGAGAATGGGAGTGCAATCACTTGGGAC GATGCCTTACATGCCAGTACACGTTACTACGAGACCAAGACCTACAACATTTTCACTTGCAATTGCCATTCTTTTGTTGCGAACTTCTTGAATCGGGTTT GCTACCGTGGATCAATGAACTGGAACATGTTGAACGTGGCTACCTTAGTTCTGTTAAAGGGTCATTGGATAGACTGAAAATCAGTGGTGAGATCTTTCCT GCCGTTCGCACTGGTGCCGTGTCTGGGTGTGTCTCTGGTGGGCTGGCCTTTTATAATGGGGCTCTTATGTTTTTTCCTCATTCTGATTGGGTGGTTTTCC GTGCCCTGAGTATATTAAACGGTTTTGTGGCCTTCTTCACTGCATGCAACAGACATCGTCTCGGGCTCATTTCCCATGCCCGAAGCCTATACAAACCTAA ACCGCTGCAGAATCTGAAGTACACAAGCACACAAATAAATCGGTGTTCCTTACCATCGATGGAGAACAAGCACACAAAGAAATCGGCCGCCGCCGGCAAA GATTTGATTTCAAATTTGCCAGACAAAATCATTCACTACACCATGACCGCAAACCAGGCGGCGCAAACCAGTACACTGTCCAAGCGATGGGGAGATATCA GGTACTCTTATCCTGTCGTGGCAAACCCCACGATGATGAACATGGAAGGTTTCCAGAACTTCACCGACGCAACGATGAAGAAGTTTTCTCGAGACAGACT GTTGCAGATGGAAAAACTCTCGATATCGGTTGATCCAGACAAGGACACTCTCCGTTGCCCGCTGTTAGAGAAGCTGCTGGATCTGGCCTCCAAGAGGAAA GCAGAGTATATCTCCATCAACATAATGAGGTTCGATTCAGTCCACTTCCCCATCGAATTACTCTCCGATTGCAGCGCACACACTCTCCCGGTCACCTTCG AAGACAAATAA
AA sequence Show only first row Show all	>Lus10035322 pacid=23170480 polypeptide=Lus10035322 locus=Lus10035322.g ID=Lus10035322.BGIv1.0 annot-version=v1.0 MDIKGAYDIEQVSLKSGIEHELWPLEESDPKKARFPCCLVWTPLPVVSWLAPFMGHVGICREDGAILDFSGSNLVSHDNFAYGAAARYLQLDRDQACYAF YLSLSALFLSEPWGSYMQARVYAHGEWECNHLGRCLTCQYTLLRDQDLQHFHLQLPFFCCELLESGLLPWINELEHVERGYLSSVKGSLDRLKISGEIFP AVRTGAVSGCVSGGLAFYNGALMFFPHSDWVVFRALSILNGFVAFFTACNRHRLGLISHARSLYKPKPLQNLKYTSTQINRCSLPSMENKHTKKSAAAGK DLISNLPDKIIHYTMTANQAAQTSTLSKRWGDIRYSYPVVANPTMMNMEGFQNFTDATMKKFSRDRLLQMEKLSISVDPDKDTLRCPLLEKLLDLASKRK AEYISINIMRFDSVHFPIELLSDCSAHTLPVTFEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10035322 [exp]	0	1
AT1G43130		LCV2	like COV 2 (.1)		Lus10018868 [exp]	2.4	0.8575
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	4.7	0.8557
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	7.3	0.8217
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	10.8	0.8396
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	11.4	0.8140
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	13.2	0.7808
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	13.7	0.8208
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	15.0	0.8371
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	15.1	0.7447
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	16.1	0.8275

Compare expression of checked genes

Lus10035322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.