Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17350 234 / 3e-79 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) AT1G72420 218 / 9e-73 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029985 [exp] 293 / 1e-102 AT1G17350 336 / 1e-118 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10027384 [exp] 61 / 5e-13 AT1G17350 51 / 1e-09 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10029255 [exp] 42 / 0.0001 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 41 / 0.0002 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076600 [exp] 250 / 3e-85 AT1G17350 318 / 4e-111 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Potri.004G061200 [exp] 40 / 0.0005 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF08547 [flax] [poplar] CIA30 Complex I intermediate-associated protein 30 (CIA30)
Representative CDS sequence Show only first row Show all	>Lus10035323 pacid=23170589 polypeptide=Lus10035323 locus=Lus10035323.g ID=Lus10035323.BGIv1.0 annot-version=v1.0 ATGTACCTGAATGCATTTCCTCCATCTATAGCTCTTAAAGGGAACCTTGAAGAATTGATGCCTCCTTCCGAGAAGCTTATTTTCGGCTTCAACTCAAAAG AAGAGCTAAAGAGATGGCATCTCTATTCTGACTCAGAGTATGGAGGGGTTTTCTCTGGAAGCTTGTCAGTAGATCTAGCTGAGGATTCAAAGTGGAACAT AAGTAGAAGTGGCTTTTGCGGAATGCGTTCCAAGAAGTTTGATGGTTTCATTGATCTTGATTCATATGACACAATTGCTATGAAACTTAAAGGTGACGGA AGAAGCTATATATCCACTATCCCTCTCACTCAATACCTACCGACATGGAGAGGAAACGTTATAAACGTGGAGATGGAGATGAACCCGTCTCGTGTTCTTG GGATGTCCCTCTCGGTCAATGTGGAAGGAGGAGTCCCCGGTGCCAGAACCGGTCCAGGTGATTTCAGAGTTGACCTCGATTGGATCAAAGCCATTCGATC ACAAGAGTAA
AA sequence Show only first row Show all	>Lus10035323 pacid=23170589 polypeptide=Lus10035323 locus=Lus10035323.g ID=Lus10035323.BGIv1.0 annot-version=v1.0 MYLNAFPPSIALKGNLEELMPPSEKLIFGFNSKEELKRWHLYSDSEYGGVFSGSLSVDLAEDSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDG RSYISTIPLTQYLPTWRGNVINVEMEMNPSRVLGMSLSVNVEGGVPGARTGPGDFRVDLDWIKAIRSQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10035323 [exp]	0	1
AT5G46850			unknown protein		Lus10040093 [exp]	18.3	0.5344
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10042909 [exp]	24.2	0.4773
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	29.3	0.5082
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	33.6	0.4863
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	107.0	0.4045
AT3G07220	FHA		SMAD/FHA domain-containing pro...		Lus10038197 [exp]	169.6	0.3670

Compare expression of checked genes

Lus10035323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.