Plant FIBer expression Database

Lus10035324 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03910 97 / 6e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027730
[exp]
100 / 8e-28 ND 328 / 7e-110
Lus10035559
[exp]
98 / 1e-27 ND 301 / 4e-100
Lus10030000
[exp]
102 / 6e-27 AT1G03910 713 / 0.0 unknown protein
Lus10027731
[exp]
99 / 6e-26 AT1G03910 875 / 0.0 unknown protein
Lus10035558
[exp]
98 / 2e-25 AT1G03910 870 / 0.0 unknown protein
Lus10027605
[exp]
81 / 9e-21 AT1G03910 242 / 4e-77 unknown protein
Lus10021530
[exp]
80 / 3e-20 AT1G03910 253 / 2e-81 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G118700
[exp]
95 / 3e-24 AT1G03910 849 / 0.0 unknown protein
Potri.001G242900
[exp]
68 / 6e-15 AT1G03910 250 / 1e-76 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09732 CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence
>Lus10035324 pacid=23170468 polypeptide=Lus10035324 locus=Lus10035324.g ID=Lus10035324.BGIv1.0 annot-version=v1.0
ATGGTTCAAGGATACAAGTTCAACATCTTCTACCTGGACCTCGTGGACAAGACCACGGCTCCGACATGCACGATTGATAAAGACGGGACCAGACGAGACG
TGCATCATCAGATCGCCTTACGGGACATTGCTTTCCGTATTGTGAGCGAGGAGTGGGAGTGCTCTCACAAGAAGGGGTTCAAGTGCACGTTCGAGCGCGG
GATTCTGCATCTCTACTTAAACTTGAGACGCCATCGCTACTGTCGGTGA
AA sequence
>Lus10035324 pacid=23170468 polypeptide=Lus10035324 locus=Lus10035324.g ID=Lus10035324.BGIv1.0 annot-version=v1.0
MVQGYKFNIFYLDLVDKTTAPTCTIDKDGTRRDVHHQIALRDIAFRIVSEEWECSHKKGFKCTFERGILHLYLNLRRHRYCR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G03910 unknown protein Lus10035324
[exp]
0 1
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10029220
[exp]
13.8 0.8230
AT3G56930 DHHC-type zinc finger family p... Lus10010447
[exp]
46.1 0.7626
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Lus10003862
[exp]
48.1 0.7348
AT2G34930 disease resistance family prot... Lus10016344
[exp]
58.3 0.7412
AT3G53970 proteasome inhibitor-related (... Lus10032056
[exp]
65.7 0.7244
AT3G08000 RNA-binding (RRM/RBD/RNP motif... Lus10031534
[exp]
70.6 0.7497
AT1G80700 unknown protein Lus10026096
[exp]
94.9 0.7413
AT5G50960 ATNBP35, NBP35 nucleotide binding protein 35 ... Lus10027463
[exp]
112.2 0.7458
AT3G48660 Protein of unknown function (D... Lus10041549
[exp]
148.2 0.7423
AT5G14240 Thioredoxin superfamily protei... Lus10014596
[exp]
176.0 0.7330

Lus10035324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.