Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02920 42 / 4e-05 F-box/RNI-like superfamily protein (.1) AT5G56440 39 / 0.001 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029999 [exp] 115 / 3e-34 ND 37 / 4e-04 Lus10003943 [exp] 90 / 4e-22 AT3G59160 50 / 1e-06 F-box/RNI-like superfamily protein (.1) Lus10029997 [exp] 54 / 2e-09 AT3G52680 44 / 1e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Lus10035326 [exp] 54 / 4e-09 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10025675 [exp] 49 / 4e-08 AT5G53840 45 / 1e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028664 [exp] 51 / 7e-08 AT5G50260 59 / 6e-09 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10029986 [exp] 51 / 7e-08 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027507 [exp] 50 / 2e-07 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10029951 [exp] 49 / 2e-07 AT5G53840 45 / 9e-05 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104200 [exp] 44 / 1e-05 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 44 / 2e-05 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 42 / 5e-05 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 42 / 5e-05 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 40 / 0.0002 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146500 [exp] 40 / 0.0002 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 40 / 0.0003 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035325 pacid=23170568 polypeptide=Lus10035325 locus=Lus10035325.g ID=Lus10035325.BGIv1.0 annot-version=v1.0 ATGGCCACCGCCGCCACAAACTCCGGTCAGGAAGGAGAAGACCGAATTTCGACGTTACCGGACGAGATCATCCATAAGATCCTCGATCGCCTAGAGTCCC GAGGACAGGTTGTGCAATTCAACATCCTGTCCAAAAGATGGTCCCATCTCATTCAGTCTTATCTTCTAGAATTCCGTGAAAGCTGGACTTGGCCGGCGGG GACGGAAGACACACGCGCCGACGCAATCTTGGTCGTCAGAATTCATATTATACTTTGCTCGAAGTTCTACATCGATGTTCACAACCGCATGTGGGAATTC CCTGCCGAGTTTTTGCTTCTTCGAGAGATTGATATCGAAATCGGAGTTGGCCAGTGCGGTTCTCCTGGTTGTGGTTGCACTGACTCCCGTGTAATAGTAT ATAGCATCCCAATAAGCTTCTTCTTCATGACACCGAAGGGCGAGAAGCATGATTGA
AA sequence Show only first row Show all	>Lus10035325 pacid=23170568 polypeptide=Lus10035325 locus=Lus10035325.g ID=Lus10035325.BGIv1.0 annot-version=v1.0 MATAATNSGQEGEDRISTLPDEIIHKILDRLESRGQVVQFNILSKRWSHLIQSYLLEFRESWTWPAGTEDTRADAILVVRIHIILCSKFYIDVHNRMWEF PAEFLLLREIDIEIGVGQCGSPGCGCTDSRVIVYSIPISFFFMTPKGEKHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	1.4	0.9870
					Lus10031183 [exp]	2.2	0.9871
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	3.3	0.9722
					Lus10021851 [exp]	4.9	0.9849
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	5.5	0.9736
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	5.7	0.9849
					Lus10008791 [exp]	6.3	0.9849
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	6.8	0.9106
					Lus10012440 [exp]	6.9	0.9849
					Lus10026713 [exp]	7.9	0.9811

Compare expression of checked genes

Lus10035325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.