Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53840 61 / 7e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G27750 61 / 9e-11 F-box/FBD-like domains containing protein (.1) AT5G03100 57 / 1e-09 F-box/RNI-like superfamily protein (.1) AT5G53640 55 / 9e-09 unknown protein AT2G04230 54 / 2e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G13780 53 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52680 53 / 4e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G60400 53 / 4e-08 F-box/RNI-like superfamily protein (.1) AT4G00160 52 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 52 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029986 [exp] 176 / 9e-52 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027471 [exp] 138 / 2e-39 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035308 [exp] 118 / 7e-33 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037440 [exp] 114 / 3e-29 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 103 / 1e-26 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10029952 [exp] 103 / 2e-26 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029998 [exp] 104 / 2e-25 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10018543 [exp] 99 / 1e-23 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030031 [exp] 87 / 7e-22 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104200 [exp] 71 / 3e-14 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 64 / 6e-12 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 63 / 2e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 55 / 7e-09 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 48 / 2e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G121500 [exp] 45 / 1e-05 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.015G002001 [exp] 45 / 2e-05 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G098700 [exp] 45 / 2e-05 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.017G146400 [exp] 45 / 3e-05 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 44 / 3e-05 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035326 pacid=23170471 polypeptide=Lus10035326 locus=Lus10035326.g ID=Lus10035326.BGIv1.0 annot-version=v1.0 ATGGAGAGTCAACCTACAAAATCGACCGCCGGCGGCGAAGATCGAATCTCGGAATTGCCAGATGCAATCCTCCACTCCATCTTCCGCCGCATACCGTCCT CAAAAGAAACAGTGCAGACCGTCGTACTTTCCATTCGATGGCGAAATCTCTGGCGATCTTACCCTGTCGTGGAGTTCAAATCCAAGACTACGGAAGCTTT ACAGAAATTCGTCCACGAAACGATGAAGAACTTTTCTCCAGACAAACAGTTGCGGATGGAATCTCTCAAGGTGTCGCTCGATCTATGCAATCTCGACATC CGTTCCCCATATGTGGATCAGCTGCTGGATTCGGCCTCGAAGAACAAAGCAGAGTGTGTGGCCATCAAGGTAAATATCCATGGCGTCAAAGAATGCGTAA TGCATCCCTTTCTCTGCTTATCCTTCGAATCGCTCTCGAATTCCAGCGCAAGGACTATCCACTTGGAGAGAATCCGGTTTAAATCGAAGAACGAAACCCG TGACGACGACGGAGATCTACGTCTTTCCCTTGATTCTCTACTTCACCTGTATCTGGATAGGATCGAATTTCCCGATCCTCTGCTTTTCACAAGCTTGATG GGTAGCTCTCCGCTCCTCGAAACCCTAGAAATAATCATGTTTACGGAATGA
AA sequence Show only first row Show all	>Lus10035326 pacid=23170471 polypeptide=Lus10035326 locus=Lus10035326.g ID=Lus10035326.BGIv1.0 annot-version=v1.0 MESQPTKSTAGGEDRISELPDAILHSIFRRIPSSKETVQTVVLSIRWRNLWRSYPVVEFKSKTTEALQKFVHETMKNFSPDKQLRMESLKVSLDLCNLDI RSPYVDQLLDSASKNKAECVAIKVNIHGVKECVMHPFLCLSFESLSNSSARTIHLERIRFKSKNETRDDDGDLRLSLDSLLHLYLDRIEFPDPLLFTSLM GSSPLLETLEIIMFTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27750			F-box/FBD-like domains contain...		Lus10035326 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	5.6	0.6388
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023434 [exp]	7.3	0.5608
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	10.5	0.6178
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10024332 [exp]	15.0	0.5587
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	25.8	0.5668
					Lus10002071 [exp]	28.6	0.5283
AT4G37110			Zinc-finger domain of monoamin...		Lus10021004 [exp]	28.9	0.5645
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	30.0	0.5190
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	33.6	0.5380
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10039683 [exp]	33.8	0.5211

Compare expression of checked genes

Lus10035326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.