Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20920 867 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G09620 787 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 406 / 3e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 393 / 2e-125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 388 / 9e-125 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 305 / 9e-92 DEAD box RNA helicase family protein (.1.2) AT3G01540 303 / 4e-91 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 309 / 2e-89 DEAD box RNA helicase family protein (.1) AT2G33730 300 / 6e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G51280 295 / 2e-88 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037527 [exp] 409 / 9e-129 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011466 [exp] 409 / 2e-122 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 381 / 2e-120 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 375 / 1e-119 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 375 / 2e-119 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 377 / 7e-119 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032133 [exp] 306 / 5e-92 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 305 / 2e-91 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10025525 [exp] 296 / 9e-91 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257400 [exp] 910 / 0 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 904 / 0 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 405 / 2e-127 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 382 / 4e-122 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 385 / 7e-122 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 380 / 5e-120 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.019G130900 [exp] 315 / 2e-96 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 312 / 6e-93 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 318 / 2e-92 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 309 / 2e-91 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10035327 pacid=23170532 polypeptide=Lus10035327 locus=Lus10035327.g ID=Lus10035327.BGIv1.0 annot-version=v1.0 ATGGAGGATGTCAAGGCTAAATCTAGGAAGGAAGATGGTTCTAAGAGGAGCCACCGCCACAAGGAGCGGAATGGGGATAGCCACCGCAGCAGCAGAGAGA AGCGAGACAGATCAGAGAGGGAGAGAAGTGTCCACTCTGATAGCTCGTATGAGAAGGAAAAGGATGTGGGCAAGCGTAAGGAGAGAACCACGGATAGAGA TAAACATCATCACCGTAGGGAGATGAGTATCGATTCTGATAACAAGTATGAGAAAAACAAGGATCGAGATAAGCGTAAGGAGAAGGACAGGGACATTGAT AAGGATCACCGGCGTCGGCAGAGGGAAAAGAGCATTGAGTCTGATAGCAAGTATGAGAAGAAGAGAGACAAGGATAGAGGGAAACATAAGGAGAAGGACA TAGACATAGATAAGGATGACCAGCCTTCGGAGAGGGAAAAAAGTATTGATTCTGACAGCAAGTATGAGAAGCGGAAGGACAAGGAAAAAAATCACAGGAA CAAAATCCGCAAAGATGGAAAAGAAAGATCCCGAGATAAGAAGAGAAACAGAGATGAAGAAGTTAATGAACAGGATAAGGATCGTGACCGGGAGAAAGAG AGGGAGGAGAAGAGGAGCAGGACAAGGGAGAAAGATAAAGAGAGGGACAGGGACAGGGAGCGTGAAAGGGAGAAGAAAGAACGCGAGAGGGAAGAAAAAG AGAAGAAAGATAGAGAAAGAAGGTCAAGGGGGAGAGAGAAACGTCAGGGTTATAGTAGTGAGGATAGCGAGGATGAATCCAAGGACCATGATAAGAAAAG GCGGAGAAGGGAAATAGACGACTACAAGGAGAAAGCACGAGAACAGCCCGTTAGCAGCAGGTCGAGCAAGCGCAAGGATGACATTGATGATGATCAAAGC CAGCCGAGAAAGGTTGCGAATGATGATAAGGAAGATAAGGAGAGTTCTAGAACTCGAGAGGAGGAATTAGAGGATGAACAAAAGAGATTGGATGACGAAA TGGAGAAAAGGAGAAGAAGGGTTCAGGAATGGCAAGAACTGAAGAGGAAGAAGGAAGAATCCGAGCGCGAAAAGCTTGGCGAAACAGCAAACAACGACGA GCAGCCGAAATCTGGTAAAACCTGGACCCTTGATGGAGAATCTGATGATGAAGATGGAGGAGGGCCTATCCTGGAGAAATCGGACATGGAAATGGATGTG GATGAAACTTCCAAACAACCTGATGAAGAAACGAGAGATGCAATGGCTGTAGTTCCCGAGGATGCAGCAGCAACGTCTCCTCAAGCTCAAGGTGGAAATG GTGGCATGGAGGAAGATGAAGAAATCGATCCCCTCGATGCTTTCATGAACAACATGGTGTTACCTGAAGTGGAGAAGCTCAATAGTTCAATGAATATTGA AACTACTGACAAGAACAATACAGATCTCGGCAAGAAAGACATAACAGAAGTAAGAAGAGTCAACGGGGAACGGTCAAAGAAAAGCTCGAATAAGTCTCTA GGTAGAATCATCCAAGGCGAGGATTCAGATTCAGATTACGGAGACAATGATAACGACGAGAAGCACTCGGACGATGATGAAGACGATGAAGAGTTTATCA AGAGGGTAAAGAAGACAAAGGCTGAAAAACTGTCACTTGTCGACCACAGTAAGATAGATTATAAGCCTTTCAGGAAGAATTTCTATATTGAGGTGAAGGA GATATCAAGGATGACTCCTGAAGACGTTTCCACTTACAGGAAACAACTAGAACTCAAGATACACGGGAAGGACGTGCCCAAGCCGATCAAGACGTGGCAT CAAACCGGACTCACTACCAAAATTATGGACACTATCAAGAAGCTGAACTACGAGAAGCCGATGCCGATTCAATCACAAGCTCTGCCAGTAATCATGAGCG GTCGAGACTGCATCGGTATTGCCAAGACCGGTTCCGGCAAGACCCTCGCATTTGTCTTGCCGATGCTGAGGCATATCAAGGATCAGCCGCCGGTGGAAGC CGGAGACGGACCGATTGGGCTGATTATGGCACCTACGAGAGAGCTTGTGCAGCAGATCCACAGCGATATTCGAAAGTTTTCAAAAGCTCTGGGGCTCGGA TGTGTCCCTGTATATGGAGGTTCAGGCGTTGCGCAACAAATTAGCGAACTGAAGAGAGGGACTGAGATTGTCGTCTGCACCCCCGGTAGAATGATCGACA TATTGTGCACTAGTGGCGGAAAGATTACGAATCTTCGGAGGGTCACGTATCTGGTCATGGATGAAGCGGATCGAATGTTTGACATGGGGTTTGAACCTCA GATCACCAGAATTGTACAGAACATTCGTCCTGACCGGCAAACCGTGTTGTTTTCCGCTACTTTTCCTCGACAGGTCGAGATTTTGGCTCGTAAGGTGTTG AACAAACCGGTCGAGCTGCAGGTTGGCGGTCGGAGCGTCGTGAATAAGGATATAGCGCAGTTGGTCGAGGTTCGGCCGGAAAACGAAAGAATCTTAAGAC TGTTGGAGCTTCTGGGTGAATGGTATGAGAAAGGGAAAATTCTGGTCTTTGTCCAGTCACAGGAAAAATGTGATAAGTTGTTTCAGAGTATGCTGACGCG TGGCTATCCTTGTCTTTCCCTCCACGGAGCAAAAGACCAGACGGATCGCGAATCTACTATCTCCGATTTCAAGAACAACGTCTGCAACTTATTGATTGCG ACGAGTATTGCGGCCAGGGGTTTGGATGTGAAGGAGCTTGAGTTGGTGGTGAATTACGACGTTCCCAACCACTACGAAGATTACGTCCACCGCGTTGGCC GGACGGGGCGAGCCGGCCGCAAAGGCTGCGCGATCACTTTCATATCAGGGGGAGATGTTTCATATCAGAGGACGATGCGAGATACGCGCCAGATCTCGTC AAGGCGTTGGAGCTTTCGGAGCAAGTCGTGCCAGATGATCTGA
AA sequence Show only first row Show all	>Lus10035327 pacid=23170532 polypeptide=Lus10035327 locus=Lus10035327.g ID=Lus10035327.BGIv1.0 annot-version=v1.0 MEDVKAKSRKEDGSKRSHRHKERNGDSHRSSREKRDRSERERSVHSDSSYEKEKDVGKRKERTTDRDKHHHRREMSIDSDNKYEKNKDRDKRKEKDRDID KDHRRRQREKSIESDSKYEKKRDKDRGKHKEKDIDIDKDDQPSEREKSIDSDSKYEKRKDKEKNHRNKIRKDGKERSRDKKRNRDEEVNEQDKDRDREKE REEKRSRTREKDKERDRDREREREKKEREREEKEKKDRERRSRGREKRQGYSSEDSEDESKDHDKKRRRREIDDYKEKAREQPVSSRSSKRKDDIDDDQS QPRKVANDDKEDKESSRTREEELEDEQKRLDDEMEKRRRRVQEWQELKRKKEESEREKLGETANNDEQPKSGKTWTLDGESDDEDGGGPILEKSDMEMDV DETSKQPDEETRDAMAVVPEDAAATSPQAQGGNGGMEEDEEIDPLDAFMNNMVLPEVEKLNSSMNIETTDKNNTDLGKKDITEVRRVNGERSKKSSNKSL GRIIQGEDSDSDYGDNDNDEKHSDDDEDDEEFIKRVKKTKAEKLSLVDHSKIDYKPFRKNFYIEVKEISRMTPEDVSTYRKQLELKIHGKDVPKPIKTWH QTGLTTKIMDTIKKLNYEKPMPIQSQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGPIGLIMAPTRELVQQIHSDIRKFSKALGLG CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL NKPVELQVGGRSVVNKDIAQLVEVRPENERILRLLELLGEWYEKGKILVFVQSQEKCDKLFQSMLTRGYPCLSLHGAKDQTDRESTISDFKNNVCNLLIA TSIAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGCAITFISGGDVSYQRTMRDTRQISSRRWSFRSKSCQMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	1.4	0.9295
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	2.0	0.9033
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	3.0	0.9024
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	3.2	0.8863
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	3.7	0.8825
AT3G49601			unknown protein		Lus10000736 [exp]	5.2	0.8750
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	6.0	0.8840
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	6.9	0.9018
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	8.9	0.8744
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	9.5	0.8640

Compare expression of checked genes

Lus10035327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.