Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09620 248 / 3e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 233 / 1e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G29390 43 / 0.0001 RIK RS2-interacting KH protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029986 [exp] 334 / 3e-112 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025525 [exp] 153 / 5e-44 AT1G20920 451 / 2e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10026739 [exp] 147 / 4e-42 AT1G20920 174 / 9e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015384 [exp] 47 / 7e-06 AT3G29390 418 / 9e-142 RS2-interacting KH protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003600 [exp] 267 / 2e-82 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 204 / 3e-60 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G093600 [exp] 48 / 2e-06 AT3G29390 443 / 3e-149 RS2-interacting KH protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035328 pacid=23170639 polypeptide=Lus10035328 locus=Lus10035328.g ID=Lus10035328.BGIv1.0 annot-version=v1.0 ATGGCGAAGGTGAATCAAGGACTCGAGCAGGCGCACGGTACCGGTTATGGTGGGAGCGGGTTCAAGTTCAACGAGGAGGAGGATGAAAAGAGGATGGCGG CGAAGAAAGCGCAGGCGAAAGAGTACGGCTTCGAGGAGGACAAGTCCGATTCTGAAGACGACGATGAGGGAATTCGAAAGACCGGGAACGATTTGTCGCA GCAGGCCGCCCGTGCTCAGCAGATGGCGGTTCTCGCGGCAGCCGCCGTAAAGGCAACGGAACCCCCAGCTGGTGCACTCAGTGTACCGCCGATTTCAGTT CCATCGGCCGATGGAACCGCTAGAGCGCAAGCCCAAGCATTGGCGGCGGCAATGAACTTGCAGCATAACTTGGCGAAGCTTCAAGCCGATGCTTTGCCAG AGCACTACGAAGCCGAGCTGGAGATCAACGATTTCCCTCAGAACGCTCGGTGGAAGGTGACGCACAAGGAAACGTTGGGGCCAATTTCAGAGTGGACCGG AGCGGCCATTACGACGAGGGGGCAATACTTCCAGCCGGGGCGTATACCTGGGACGGGAGATAGGAAGCTGTACTTGTTTATTGAAGGACCAAATGAGATA TCGGTGAAGAGGGCTAAGGCGGAACTGAAGCGTGTCCTAGAAGATATTACTAACCAGGCATTGTCGCTTCCTGGTGGTGCACAGCCCGGAAAGTACTCCG TCGTATAA
AA sequence Show only first row Show all	>Lus10035328 pacid=23170639 polypeptide=Lus10035328 locus=Lus10035328.g ID=Lus10035328.BGIv1.0 annot-version=v1.0 MAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAKEYGFEEDKSDSEDDDEGIRKTGNDLSQQAARAQQMAVLAAAAVKATEPPAGALSVPPISV PSADGTARAQAQALAAAMNLQHNLAKLQADALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFQPGRIPGTGDRKLYLFIEGPNEI SVKRAKAELKRVLEDITNQALSLPGGAQPGKYSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	1.0	0.9437
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	1.4	0.9295
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	1.7	0.9034
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	2.4	0.8942
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	4.1	0.8536
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	9.2	0.8909
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	10.5	0.8703
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	10.6	0.8552
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	11.0	0.8686
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	14.1	0.8378

Compare expression of checked genes

Lus10035328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.