Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04990 327 / 2e-108 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 303 / 2e-98 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G02830 259 / 7e-82 C3HZnF ZFN1 zinc finger protein 1 (.1) AT2G47850 242 / 2e-74 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 241 / 3e-74 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G16540 237 / 8e-74 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT3G06410 230 / 4e-70 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G48440 211 / 7e-63 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 209 / 3e-62 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 131 / 5e-33 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029988 [exp] 795 / 0 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 466 / 2e-162 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10020196 [exp] 285 / 2e-91 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10031528 [exp] 275 / 4e-90 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10026996 [exp] 280 / 2e-89 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10013476 [exp] 229 / 6e-70 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 226 / 9e-69 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 223 / 3e-68 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 223 / 3e-67 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159500 [exp] 517 / 0 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 516 / 0 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 281 / 8e-90 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 277 / 3e-88 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 240 / 6e-74 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 233 / 7e-71 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.012G092500 [exp] 206 / 6e-61 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 202 / 2e-59 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 167 / 7e-46 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 140 / 4e-36 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10035330 pacid=23170608 polypeptide=Lus10035330 locus=Lus10035330.g ID=Lus10035330.BGIv1.0 annot-version=v1.0 ATGCCAGATACTAACACTAACACCAGGCAGCAGACGAAGAACAACAATGCTGGGCCGAATCAATCCTCTGATAATATTGAAGAAGCAATTAGAAGGCTGA AGATCCATGATGATCAGGAGAAAGGAGGAGGTGGCGGTGATGTGAATGATTCCGGTCCGTATCCGGATCGACCCGGCGAACCGGACTGCGTGTATTACTT GAGGAATGGAGTTTGTGGCTATGGCGTTAATTGCCGCTATAATCACCCCCAGTATGCTGCACAGGTGACAAAGGGTTCGCAGTTTAAAGAGGAGCTTCCT GAGCGAGTTGGAGAGCCTGATTGTGGGTATTATCTGAAAACAGGAACTTGCAAGTATGGTTCGACGTGTAAATATCATCACCCAAAGGACAGGAATGGTG CAGGACCGGTCTCGTACAACCTTCTGGGTCTTCCTATGAGACAGGATGAAAAATCATGCCCTTACTATATGCGTACTGGAGCGTGCAAATTCCAAGGTGC TTGCAAGTTTCATCACCCTCAACCTGCATCACTTGAAGCCGGGGTTCCTCTTGCTGGCCTCTCTACTTATGGATCGACAGGTTCATCGTTGATCCCGACT GCTGGTTTACCGTATGTTGGAGGAATTCCAGCTTGGTCTATGCCAAGGGTACCTTATATGCCAGCTCCACGGCTTGAAACTCCGCAGGCATTTGCACCCC TTTATATCTCTCCTTCCCAAGGCATTCCCCCTCCTGCACAGGGCTGGAACACTTATGTGGGAAACGTAAGCCCGATGTCTTCTCCTAGCATCTTGGGATC AAATCTAGTTTTCAACTCCAGGAACCATGACTCAGCTCCTTCCAATGGGCAAATCCATTTGATGTCCTCCTCACTTACCTCTAATCTTCCTCAAAGGCCT GATCAACCAGAATGCCGACACTTCATGAACACCGGAATTTGCAAATACGGATCCGATTGCAAGTACCATCACCCAAAGGAGAGAACTGTTCATCAGCTCG CTACAAATCCAGCAGCCCCTCTCGGACTCCCCTCTCGACCGGGTCAGGCTCTATGTTCCAACTACAGTACATACGGCATCTGCAAATTTGGCTCCAACTG CAGATACGATCACCCTTTCACCGGATACCCTTACAGCTACAGCTTAACCGTTCCTCCGTTATCCGTGCTGGACCCTTCCATGGTAACTTATCCGCCAAGA ATGTCCGAACCTCCTCTGACTGCACCACCGACAAAAGTTTACTACAACAATAACGGTGCAAGAAACACGAAACCTCAGTACCAGATGAATGCAGGTAACA ATACTAAAAAGACGATCGCTGCTACTACTACGACTACTCCTCCGTCGGACGAAGCCACTGACACTACCGCCGATCCTTCGCCTCCGCCACATTCGTCGTC CAAGGCTTCCTCAGAGGCTTCGCACGATTGA
AA sequence Show only first row Show all	>Lus10035330 pacid=23170608 polypeptide=Lus10035330 locus=Lus10035330.g ID=Lus10035330.BGIv1.0 annot-version=v1.0 MPDTNTNTRQQTKNNNAGPNQSSDNIEEAIRRLKIHDDQEKGGGGGDVNDSGPYPDRPGEPDCVYYLRNGVCGYGVNCRYNHPQYAAQVTKGSQFKEELP ERVGEPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSYNLLGLPMRQDEKSCPYYMRTGACKFQGACKFHHPQPASLEAGVPLAGLSTYGSTGSSLIPT AGLPYVGGIPAWSMPRVPYMPAPRLETPQAFAPLYISPSQGIPPPAQGWNTYVGNVSPMSSPSILGSNLVFNSRNHDSAPSNGQIHLMSSSLTSNLPQRP DQPECRHFMNTGICKYGSDCKYHHPKERTVHQLATNPAAPLGLPSRPGQALCSNYSTYGICKFGSNCRYDHPFTGYPYSYSLTVPPLSVLDPSMVTYPPR MSEPPLTAPPTKVYYNNNGARNTKPQYQMNAGNNTKKTIAATTTTTPPSDEATDTTADPSPPPHSSSKASSEASHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	0	1
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	1.4	0.8302
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10009728 [exp]	3.2	0.8106
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	3.7	0.8185
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	4.2	0.8193
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	4.5	0.8257
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	5.3	0.8208
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	6.6	0.8064
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	6.7	0.8215
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	7.5	0.8152
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	8.2	0.7979

Compare expression of checked genes

Lus10035330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.