Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05000 291 / 2e-100 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT4G03960 267 / 4e-91 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT2G32960 265 / 8e-90 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 206 / 5e-67 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 197 / 1e-63 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029991 [exp] 442 / 9e-160 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10031529 [exp] 315 / 3e-110 AT1G05000 304 / 2e-106 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10015154 [exp] 313 / 7e-109 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159100 [exp] 314 / 3e-109 AT1G05000 310 / 3e-108 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.002G224000 [exp] 313 / 4e-109 AT1G05000 300 / 9e-105 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.004G002800 [exp] 284 / 5e-98 AT1G05000 286 / 4e-99 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.011G021100 [exp] 280 / 4e-96 AT4G03960 288 / 4e-100 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.013G086500 [exp] 203 / 3e-66 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF03162 [flax] [poplar] Y_phosphatase2 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10035333 pacid=23170543 polypeptide=Lus10035333 locus=Lus10035333.g ID=Lus10035333.BGIv1.0 annot-version=v1.0 ATGAAACTGGATCGCGATTTTCCTGCCGCCGCCGGAAAACTACATCAGCAGCAGAATCAAGACAGAGGAGAGAAAATTAGCGCAGATGAGGAGATGTGCA AGACCATCGAAGTCGCTACCTTCATTGACTACCACCACCACCGCCGGCTGAAAATTCAGCCGGAGCTATACTCGTCGCCGGTTAATGCCGTCGACATCGT CGGAGATGATCACGAATTGAATCTCCTCCCTCCGCTGAACTTCGCGATGGTTGATAACGGAATATTCCGGTCCGGTTTCCCCAATTCCATCAACTTCTCC TTCGTCCAGGCTCTCGGCCTCCGGTCAATCATATGCATGTGTCCGGAGCCATATCCGGAGGCGAACGCGGAGTTTCTCAAGGAGAATGGGATTAGGCTTT TCCAGTTCGGAATTGAAGGTTACAAGGAATCATTCGTAAACATCCCCCACGACATGATTCGAGAAGCGTTACAAGTCGTCCTTGATGTGAAGAACCACCC GATCTTGATCCACTGCAAGCGAGGGAAGCATCGAACGGGGTGCATGGTGGGTTGCTTGAGGAAGCTGCAGAAGTGGTGCCTGTCGTCGATTTTCGACGAG TACTCGAGGTTCGCCGCGGCAAAGGCTAGAGTGTCGGACCAAAGGTTCATGGAGTTGTTTGACGTTTCCACCTTGAACCATTTGCCTATGTCGTTTTCCT GCTCCAGTTTTTCCAAGGAGTAG
AA sequence Show only first row Show all	>Lus10035333 pacid=23170543 polypeptide=Lus10035333 locus=Lus10035333.g ID=Lus10035333.BGIv1.0 annot-version=v1.0 MKLDRDFPAAAGKLHQQQNQDRGEKISADEEMCKTIEVATFIDYHHHRRLKIQPELYSSPVNAVDIVGDDHELNLLPPLNFAMVDNGIFRSGFPNSINFS FVQALGLRSIICMCPEPYPEANAEFLKENGIRLFQFGIEGYKESFVNIPHDMIREALQVVLDVKNHPILIHCKRGKHRTGCMVGCLRKLQKWCLSSIFDE YSRFAAAKARVSDQRFMELFDVSTLNHLPMSFSCSSFSKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10035333 [exp]	0	1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10026949 [exp]	2.4	0.9613
AT2G18210			unknown protein		Lus10028324 [exp]	3.9	0.9711
AT1G03070			Bax inhibitor-1 family protein...		Lus10022085 [exp]	9.7	0.9353
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	11.0	0.9581
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	11.8	0.9607
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	14.8	0.9600
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	15.4	0.9573
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	21.4	0.9607
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	23.5	0.9550
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10026783 [exp]	24.0	0.9554

Compare expression of checked genes

Lus10035333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.