Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05010 453 / 2e-161 ACO4, EAT1, EFE ethylene forming enzyme, ethylene-forming enzyme (.1) AT1G62380 435 / 2e-154 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G12010 431 / 8e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G19590 276 / 5e-92 ATACO1, ACO1 ACC oxidase 1 (.1) AT1G77330 275 / 1e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 166 / 2e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 166 / 2e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 161 / 9e-47 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 162 / 1e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10490 159 / 4e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029992 [exp] 605 / 0 AT1G05010 496 / 2e-178 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10015153 [exp] 517 / 0 AT1G05010 501 / 1e-180 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10031530 [exp] 515 / 0 AT1G05010 498 / 3e-179 ethylene forming enzyme, ethylene-forming enzyme (.1) Lus10028678 [exp] 287 / 5e-96 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 286 / 1e-95 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008564 [exp] 284 / 9e-95 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10005037 [exp] 163 / 5e-47 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 157 / 5e-45 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011980 [exp] 154 / 4e-44 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G159000 [exp] 491 / 1e-176 AT1G05010 464 / 8e-166 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.002G224100 [exp] 482 / 5e-173 AT1G05010 440 / 2e-156 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.011G020900 [exp] 469 / 8e-168 AT1G05010 473 / 1e-169 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.004G003000 [exp] 467 / 6e-167 AT1G05010 467 / 6e-167 ethylene forming enzyme, ethylene-forming enzyme (.1) Potri.006G151600 [exp] 295 / 3e-99 AT2G19590 462 / 2e-165 ACC oxidase 1 (.1) Potri.005G182700 [exp] 291 / 6e-98 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G078600 [exp] 288 / 9e-97 AT1G77330 455 / 1e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 172 / 4e-51 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 168 / 3e-49 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 167 / 8e-49 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10035334 pacid=23170569 polypeptide=Lus10035334 locus=Lus10035334.g ID=Lus10035334.BGIv1.0 annot-version=v1.0 ATGGAGTTCCCAATCATCAACATGGAGGAGCTCGCCGGCGAAGAGAGATCCGCTACCATGGCCAAGATCAACGACGCCTGCGAGAACTGGGGCTTCTTTG AGATTCTGAACCATCCGATTCCGGTGGAGCTGCTGGACATGGTGGAGGCGATGACGAAAGAGCATTACAGGAAATGCTTGGAGCAGAGGTTCAAGGAGCT AGTGAAGAGCAAGGGGCTCGATGAGGTCGATTCCGAGATCAAGGACATGGACTGGGAGAGCACCTTCTACTTGAAACACCTTCCCGAATCGAACATCAAC GAGGTCCCTGATCTCGAGGAGCGATACCGGGAGGTGATGAAGGACTTTGCGGGTAGGCTTGAGAAGCTGGCGGAGGAGCTTCTCGATTTGCTGTGTGAGA ATCTCGGGCTTGAGAAAGGGTACTTGAAAAAGGCGTTTTATGGATCGAAAGGGTTGCCTACTTTCGGTACGAAAGTGAGCAACTACCCCCCTTGCCCGAA GCCCGATCTGATCAAGGGGCTCCGGGCCCACACCGATGCCGGTGGGATCATCCTGTTGTTTCAGGATGATAAAGTGAGCGGTCTTCAGCTTTTGAAGGAC GGGGAGTGGGTCGATGTCCCGCCTATGCGCCACTCGATCGTCATTAACCTCGGTGACCAGATCGAGGTGATTACCAACGGAAGGTACAAAAGCGTGGAGC ACAGGGTGGTGGCGCAGACAGACGGGACGAGGATGTCCATTGCGTCGTTCTACAACCCTGGGAACGACGCGGTGATCTACCCTGCACCTCAACTGCTCGA GGGAGAGTCGGAGACAGAGAAGAAGAGCATTACCTATCCGAAATTCGTGTTTGATGACTACATGAAGCTGTATGCCGGGCTGAAGTTTGAGGCCAAGGAG CCAAGGTTTGAGGCCATGAAGTCTAACGTCAAGCTGAGTCCAAATGTTGTCACAGTTGAGACCTTTTAA
AA sequence Show only first row Show all	>Lus10035334 pacid=23170569 polypeptide=Lus10035334 locus=Lus10035334.g ID=Lus10035334.BGIv1.0 annot-version=v1.0 MEFPIINMEELAGEERSATMAKINDACENWGFFEILNHPIPVELLDMVEAMTKEHYRKCLEQRFKELVKSKGLDEVDSEIKDMDWESTFYLKHLPESNIN EVPDLEERYREVMKDFAGRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD GEWVDVPPMRHSIVINLGDQIEVITNGRYKSVEHRVVAQTDGTRMSIASFYNPGNDAVIYPAPQLLEGESETEKKSITYPKFVFDDYMKLYAGLKFEAKE PRFEAMKSNVKLSPNVVTVETF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10035334 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	17.1	0.8818
AT1G72510			Protein of unknown function (D...		Lus10013156 [exp]	18.5	0.8776
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	22.2	0.8496
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	34.0	0.8733
AT4G14380			unknown protein		Lus10011818 [exp]	41.2	0.8244
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10003309 [exp]	43.6	0.8698
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	51.4	0.8131
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	52.3	0.8091
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	54.1	0.8668
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	61.8	0.7899

Compare expression of checked genes

Lus10035334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.