Plant FIBer expression Database

Lus10035336 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31340 826 / 0 EMB1381 embryo defective 1381 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029994
[exp]
1157 / 0 AT2G31340 824 / 0.0 embryo defective 1381 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G224300
[exp]
934 / 0 AT2G31340 863 / 0.0 embryo defective 1381 (.1)
PFAM info
Representative CDS sequence
>Lus10035336 pacid=23170552 polypeptide=Lus10035336 locus=Lus10035336.g ID=Lus10035336.BGIv1.0 annot-version=v1.0
ATGGTGCATAAACCATGGAAGATAATCCCAAGACCACTCCTAGAAACGATCCTCAACAACCACGCTCAGCATCACCGCGTCCCTCAGCCTCTCATCCTCC
ACGGCCCTCGCGGCGTCGGCAAAACCACCCTCATCCTCGACCGTCTCCTCAACGATTGGAACAAAGCTCCCCATGTCACCGGCTACGTCGACTTCGCTGA
ATCAGTGAAAGAGCATCATCCGAAGCACGGCAACTCGTTCCCATGGCCGTCCTGGTCAACCTGCGACCCGCCCGAGCTGGCCAATTGCGCGGCTCAGCTG
GAGAATTGCCTGGAATCGATGGCGCATAAGGCGATCCAGCTGGGAAGCATTTCCTCCACTCAGATATTCTCTACCGTGACCAAATGGCACCGTCCTGATA
CATCTCTACGTCGGATCATACTTCAGAACAGTGTAGGTTCCGGTTCCGGTTCGAAATTGTGGAATGCTGTTTCAGAGAAGGTTTCCGGATCGGTTTTGTG
GGACAGAGCGGTATCTGCACTAACTGCTCGATCAAATGCCAACGAGATTGATAAAGCTTTGAGCTTGGGGGAGAAAGGTAAGAGGAAGTTGTCATTTGAT
GAGGCTGCTTACTATAGGGAGGCGATGGTTGCGCTGAGGTTGGCTAAAGAGGTTGTTAAGGCGTTACAGAGGTCGAGAGGTAATGCCATTGCGGATTTGA
ATCGAAGCGGTGGGTTTTCGAGGTCTTTGGCGAATTCGTGTACCGATTGGCCTTGTTTGTTGCTTGAGTTGCTGTCACAGGCTGCAGAGATTGATTACTT
TCAGCCGAAGCTGGTGATGAATAATATTGAAGTGTTGAAGAATGCTTTGTTAACTGATGATACAATGGTGTCCGGAGCGATGTACCACGACAGCTTGATA
TGGAGAATTATTGCTTTGGGTGCGAACGAAAGGTGTCTCCCCGTTATGCTCGTGACATCCGATAGTTACTATTCTTACAGGGCGTTCATGGATTTTGGTT
TTCCAGATATCTTCATCTCTCGTGAGACCTTTGGTTGGTCTCCAAGGGAGGCTGAATTGCACTTGGTTACCGACTACTTCAGCCCGTCAGAGTGGAAGTT
GATCGTTGAAGTGCTTGGTCCGAATCCTCGACATCTATTTGAACTTTACGCACTCAAGCAAAGCAGCTATTACCAGAAGGTGCTGGAGGACAAGGATAAT
ACATTCGAAGATGTTATTGATGCATATTTAGCTTATCTCCAGATAATTGTTGTAAATCCTGCTATGGATAAAGCAATTGCAATCCTACAAAAGTTTGCTA
AGGATGCTCGAACGGGGAAGATCCCGAAGGACAGACTTCGCTTTGGTTCCCCTTGGAGGCATCCTCCAAAAAAAGATGATCCCACTCAGTCCTCCAAGTG
GGCCAAGCTACAGCTGATGGATTATATCCAGACTCTAGCAAACACTGAATTTGGGGTTAATTATTTAGCTGATTGTAGCTTGGAGGTATTGGATGATCCT
TGCACGGTCGCATTGATTGAGGTTGGATTGCTCTATGCTCAACGCGATCCATCCTTCATTCGTCCCATATCTAGGGCAGTTCAACGGTGTCTTGCCAGAT
GGCTTGTGCAGGAGAAGATGCAAATGGATTTAGGGTTCTCGTTCCGATATTCGTGGCAACGGGTCATACGTGGTCGTAGCTATCGCCATCTGATGCTAGA
AGTTGGCTATAGTAAATTTTGA
AA sequence
>Lus10035336 pacid=23170552 polypeptide=Lus10035336 locus=Lus10035336.g ID=Lus10035336.BGIv1.0 annot-version=v1.0
MVHKPWKIIPRPLLETILNNHAQHHRVPQPLILHGPRGVGKTTLILDRLLNDWNKAPHVTGYVDFAESVKEHHPKHGNSFPWPSWSTCDPPELANCAAQL
ENCLESMAHKAIQLGSISSTQIFSTVTKWHRPDTSLRRIILQNSVGSGSGSKLWNAVSEKVSGSVLWDRAVSALTARSNANEIDKALSLGEKGKRKLSFD
EAAYYREAMVALRLAKEVVKALQRSRGNAIADLNRSGGFSRSLANSCTDWPCLLLELLSQAAEIDYFQPKLVMNNIEVLKNALLTDDTMVSGAMYHDSLI
WRIIALGANERCLPVMLVTSDSYYSYRAFMDFGFPDIFISRETFGWSPREAELHLVTDYFSPSEWKLIVEVLGPNPRHLFELYALKQSSYYQKVLEDKDN
TFEDVIDAYLAYLQIIVVNPAMDKAIAILQKFAKDARTGKIPKDRLRFGSPWRHPPKKDDPTQSSKWAKLQLMDYIQTLANTEFGVNYLADCSLEVLDDP
CTVALIEVGLLYAQRDPSFIRPISRAVQRCLARWLVQEKMQMDLGFSFRYSWQRVIRGRSYRHLMLEVGYSKF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31340 EMB1381 embryo defective 1381 (.1) Lus10035336
[exp]
0 1
AT5G12220 las1-like family protein (.1.2... Lus10036063
[exp]
1.7 0.9078
AT4G23540 ARM repeat superfamily protein... Lus10035446
[exp]
4.1 0.9244
AT2G36490 DML1, ROS1 REPRESSOR OF SILENCING1, demet... Lus10035576
[exp]
5.7 0.9020
AT3G26540 Tetratricopeptide repeat (TPR)... Lus10015584
[exp]
7.1 0.9011
AT1G56570 PGN PENTATRICOPEPTIDE REPEAT PROTE... Lus10014027
[exp]
7.3 0.8999
AT5G58450 Tetratricopeptide repeat (TPR)... Lus10026402
[exp]
7.9 0.9093
AT5G52820 WD-40 repeat family protein / ... Lus10039597
[exp]
10.7 0.8839
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Lus10024470
[exp]
11.3 0.8975
AT1G63130 Tetratricopeptide repeat (TPR)... Lus10029737
[exp]
12.4 0.8884
AT5G37570 Pentatricopeptide repeat (PPR-... Lus10014212
[exp]
14.5 0.8808

Lus10035336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.