Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 268 / 6e-85 ARM repeat superfamily protein (.1.2) AT2G45720 112 / 4e-27 ARM repeat superfamily protein (.1.2) AT5G50900 110 / 2e-26 ARM repeat superfamily protein (.1) AT1G61350 92 / 4e-20 ARM repeat superfamily protein (.1) AT1G01830 91 / 8e-20 ARM repeat superfamily protein (.1.2.3) AT5G67340 49 / 3e-06 ARM repeat superfamily protein (.1) AT5G58680 45 / 3e-05 ARM repeat superfamily protein (.1) AT3G01400 45 / 3e-05 ARM repeat superfamily protein (.1) AT2G28830 42 / 0.0008 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029995 [exp] 484 / 2e-170 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10018423 [exp] 96 / 2e-21 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10002598 [exp] 95 / 5e-21 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10041369 [exp] 93 / 2e-20 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 87 / 2e-18 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10024899 [exp] 50 / 3e-06 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 45 / 6e-05 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 43 / 0.0003 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016848 [exp] 42 / 0.0004 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158700 [exp] 332 / 1e-109 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.002G224400 [exp] 329 / 2e-108 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.011G042300 [exp] 126 / 4e-32 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 123 / 1e-30 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 106 / 6e-25 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G104400 [exp] 103 / 3e-24 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 102 / 1e-23 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 101 / 3e-23 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 50 / 2e-06 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 45 / 7e-05 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035337 pacid=23170498 polypeptide=Lus10035337 locus=Lus10035337.g ID=Lus10035337.BGIv1.0 annot-version=v1.0 ATGCCTCCTTCCTCCGCCGCCGTTGTCACTCCACTTGAACCGCCGCAGTCGCTGCTCGATTTGATCAACGGCGTCCTCTCTCTCCTCTTAGTGTCCTCCC TCGCCGTCCGGTCCTACGTTGGACGGTGGCAAATAATCCGCTCCAAGCTCATCTCGCTCCAATCGTCGATCTCTTCCCTCTCCGACTCACCTCACTGGTC GCAGAACCCTTTACTCCATACTCTATTGCCGACTCTTCTCTCCACGCTCCAGCGTCTCCACGCGCTCTCCGGCCAATCCAACGACCTCTCGTCTTTCTCC GGCGGGAAGCTTTTGTTTCAGAGCGACCTCGACATCGCCTCCTCTTCTCTGTCCAACCACCTCAATGACCTCGACTTGCTCCTCAGATCCGGGGTCCTGC ACCAGTCTAACGCCATCGTTTTGTCTCAGCCTGGGCCTGGATCTGAGAAGGATGAGCTTGTTTTCTTCATCCGGGATTTATTTACCAGGTTGCAAATCGG AGGAGTCGAGTTCAAGAAGAAGGCGTTGGAGTCGCTTCTGCAGATCTTGAACGACGACGAGAAGTCGAGGTCGGCGAATCTGGTGGCGAATGAGGGGAAT ATCGGTTACTTAATCAGCCTCCTCGATCTGCATCACAACCAGCAGCTGATTCGAGACTATGCCGTCTTCGCCGTGTCGGTTCTGGCTTCGGCGAGCGACG AATCGAGGAAGATCGTGTTCGAGGAAGGTGGATTGGGACCGCTGTTGAGAGTTCTGGAGACTGGGTCGATGCCGCTGAAGGAGAAGGCGGCGATTGCGGT GGAAGCTATCACCGCTGACTCGGAAAACGGCTGGGCTGTGGCCGCCTACGGCGGCGTCGCGGTGTTAATCGAGGCTTGCCGGTCCGGATCTCAAGCTACG CAGACCCATTCCGTCGGAGCGATTCGGAACGTCGCCGCAGTCGACGACATCAAGATGGCTCTAGCGGAAGAAGGCGCAGTTCCCGTTCTGGTAAACTCAC TCGTCGTTGGAACGGCGTCGGCGCAGGAGAAGGCGGCGCACTGCCCCTCGATGCTAGCCCGCTCCGGCGAGTACTTCCGGTCGTTTTCCGGTCGTTAA
AA sequence Show only first row Show all	>Lus10035337 pacid=23170498 polypeptide=Lus10035337 locus=Lus10035337.g ID=Lus10035337.BGIv1.0 annot-version=v1.0 MPPSSAAVVTPLEPPQSLLDLINGVLSLLLVSSLAVRSYVGRWQIIRSKLISLQSSISSLSDSPHWSQNPLLHTLLPTLLSTLQRLHALSGQSNDLSSFS GGKLLFQSDLDIASSSLSNHLNDLDLLLRSGVLHQSNAIVLSQPGPGSEKDELVFFIRDLFTRLQIGGVEFKKKALESLLQILNDDEKSRSANLVANEGN IGYLISLLDLHHNQQLIRDYAVFAVSVLASASDESRKIVFEEGGLGPLLRVLETGSMPLKEKAAIAVEAITADSENGWAVAAYGGVAVLIEACRSGSQAT QTHSVGAIRNVAAVDDIKMALAEEGAVPVLVNSLVVGTASAQEKAAHCPSMLARSGEYFRSFSGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05810			ARM repeat superfamily protein...		Lus10035337 [exp]	0	1
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	1.4	0.8836
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	1.4	0.8736
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	3.0	0.7975
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	14.5	0.7626
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	17.2	0.7622
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	17.7	0.7738
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	17.9	0.7374
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	19.4	0.7930
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	21.6	0.7396
					Lus10035339 [exp]	22.0	0.7105

Compare expression of checked genes

Lus10035337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.