Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 199 / 5e-61 ARM repeat superfamily protein (.1.2) AT2G45720 84 / 1e-18 ARM repeat superfamily protein (.1.2) AT5G50900 70 / 5e-14 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029996 [exp] 330 / 7e-117 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 74 / 2e-15 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 74 / 2e-15 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10029995 [exp] 69 / 8e-14 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224400 [exp] 243 / 1e-77 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 241 / 4e-77 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.014G076500 [exp] 85 / 4e-19 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 82 / 4e-18 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.015G103700 [exp] 70 / 5e-14 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G104400 [exp] 69 / 1e-13 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035338 pacid=23170651 polypeptide=Lus10035338 locus=Lus10035338.g ID=Lus10035338.BGIv1.0 annot-version=v1.0 ATGCATTTAATTCAAGATTCCTCGAGCTCATCCGAAACAGTAGAACACGTTTTGCGCGCAATCACTGCTCTCTCCGGATCCGAATCCCTTCTATCATCCT CTACGGCGTTCGTCGTCCGGCTCGGAGAACTAATCAAGCACGGGAACCTAACACTACAGCAACTCTCGGCGTCTCTCCTAGCTCACATACCCGCCAGCGA CGGAAACAAGCGAGCAATCGGGAGCTGTATGGGTTCCCTAGTGAAGCTAATGCAGTCACCAAAACCAGCCGGTCTACAAGAATCGGCAACTCTCGCTTTA GTCTCATTGCTATCAGTACGAACCAATCGGAAAGAGCTGGTCAGAGACGAGAAGAGCGTGATGAGATTGGTACAAATGTTGGATCCAAAGTACGACTTAG TCGCCAAGAAGTATCCGGTAATGGTGGTAACAGCCTTGATGACCGGTGGCAGCGGTGGTTGCCGGAAGAGGCTACTAGCCGCCGGAGCTTACTCTCATTT GCAGCAGCTAACGGAGATGGAGGTCGCCGGATCTAAGAAGGCGTTGCAGAGACTCGCCGGAAACAGACTGAAGACTATCTTCTCAAGGACGTGGAGGGAA TAA
AA sequence Show only first row Show all	>Lus10035338 pacid=23170651 polypeptide=Lus10035338 locus=Lus10035338.g ID=Lus10035338.BGIv1.0 annot-version=v1.0 MHLIQDSSSSSETVEHVLRAITALSGSESLLSSSTAFVVRLGELIKHGNLTLQQLSASLLAHIPASDGNKRAIGSCMGSLVKLMQSPKPAGLQESATLAL VSLLSVRTNRKELVRDEKSVMRLVQMLDPKYDLVAKKYPVMVVTALMTGGSGGCRKRLLAAGAYSHLQQLTEMEVAGSKKALQRLAGNRLKTIFSRTWRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	0	1
AT2G05810			ARM repeat superfamily protein...		Lus10035337 [exp]	1.4	0.8736
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	2.4	0.8550
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	2.4	0.8503
					Lus10035339 [exp]	5.5	0.7296
AT2G18910			hydroxyproline-rich glycoprote...		Lus10025469 [exp]	8.4	0.7665
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	10.4	0.7710
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	20.2	0.7328
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	22.4	0.7633
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	26.5	0.7260
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	28.2	0.7600

Compare expression of checked genes

Lus10035338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.