Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05020 488 / 3e-164 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 294 / 6e-90 ENTH/ANTH/VHS superfamily protein (.1.2) AT2G25430 293 / 3e-89 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G02650 280 / 5e-85 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 277 / 8e-84 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 211 / 1e-59 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 211 / 1e-59 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 209 / 9e-59 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 208 / 9e-58 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 190 / 2e-52 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029998 [exp] 1201 / 0 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10002920 [exp] 304 / 2e-93 AT2G25430 909 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10001502 [exp] 304 / 2e-93 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 281 / 5e-85 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 228 / 1e-65 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10038122 [exp] 210 / 2e-59 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 204 / 8e-57 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 203 / 1e-56 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 201 / 8e-56 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224500 [exp] 571 / 0 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 560 / 0 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 311 / 3e-96 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 291 / 9e-89 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 287 / 2e-87 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 280 / 5e-85 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 212 / 6e-60 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 207 / 2e-58 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 202 / 2e-56 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 200 / 8e-56 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10035340 pacid=23170670 polypeptide=Lus10035340 locus=Lus10035340.g ID=Lus10035340.BGIv1.0 annot-version=v1.0 ATGCCAAGCAAATTGAGGAAGGCAATTGGGGCGGTGAAAGACCAAACCAGCATAAGCTTCGCCAAAATTTCTAGCGCCAACACCAGCGCCTCCAACCTAG AAGTCCTCATCCTCAAGGCCACCCGCCACGACGATGCACCGATCGACGATCGCTATGTCGCTGAGGTCCTCTCCCTCATTTCTTCCAGCAAGGCTTATGC CGGAGCGTGCGCCTTAGTCATCTCCAAACGAATCGGTCGTACGAGAAATTGGATTGTCGCGTTGAAATCTCTACTCCTCGTGTTGAGAATCTTTCAGGAC GGGGATCCTTACTTCCCTAGGGAAGTCCTCCACGCCATGAAGCGAGGAGCGAGAATCCTAAACCTGTCAGGATTCCGCGACGATTCTAACTCTAGCCCGT GGGATTTCACCGCTTTCGTCAGGACTTTCGCGTTGTACCTTGACGAGCGTCTGGATTGCTTCATTACGGGAAAACTGCAGCGCCGGTTCACAAATCGCCG TCGTGATAGCGGTGGCGATCCGAGAAACCGGAGGTTCAGGCAGCCGACAAAGATGTACTTCACCGACAACATGAAGCCTCCGGTCCTGCTGGACAAGATC TCGTTCTGGCAGAAGCTGCTCGACCGGGTGATGGCGACACGACCGACCGGTGCAGCTAAATCAAACCGGTTGGTCCAGATATGTCTATACGCCGTCGTTC AGGAAAGCTTTGATCTGTACAGAGACATCTCCGACGGATTAGCTCTTCTTCTCGACAGCTTCTTCCACCTCCCTTACCAGTCTTGCGCCACCGCTTTCCA AGCTTGCGTGAAGGCATCGAAACAATTCGAAGAGCTATGTTCTTATTACGATTTCTGTAAGGGCATGGGAGTCGGAAGGACATCGGAGTATCCGAGCGTT CAGAGGATATCGGAGGAACTGGTCGAGACATTGCAGGAATTTCTGAAAGACCAAGTTTCATTCCCTGCACACAGCCAATCTCCACCGCAATTGCGAATTG CGATGGATAAATCGATAGATCCGGAGGATGCGGAAAGTCAAGTGATACCTCATGAACGTCAATTGTCTTCGTTGGAAGACCTGATGGGGCTGGCCGGAAT GTGTCAGGATTCGTCGGAGCAATTGGATTATAACCAGGACATGATCAGTGCCAGGGATAGTGCGTCCTCGAGTTCATTACCTTCCGAACAAGGCCCCACC TCGACGACTATGAGCGCAAAGAGTAACTCGATAGATCTATTATCGCTGGACGATTGGGATTTCGAGGATTCAAGCGAAAAGGGACATGAAAAAACAAATT CAGGGTGGGAGATTGTGCTGGCGGAGATCACGACTCAGCCAAATCAGCTTTCCGAAACCGAAATTCCTAACAATTTCTTCGACTCAGGATTTGAATTCGG AAACACTCAGGTTCCTGACCAGTACCAATACAATCCGTTTCTACAAGATCTGGATATTCCTCTGTCTCAAATTGAATCACAGTCGACGAAGGCGGCTCCG GTAGCCAATGGAGATGAAAAGAGCATTTTCCTAGTGGACGATCTGTTCTCGTTGCCGTCGCCGGCGCTGGCCGTCGTAGCTCCGACTTTCCAATCAATTC CGACGTTCAGCGTTCAGAGTCCTGAGATCAATGAATTAGGAGATTGGAAACTCGAACAGAGGACGAAAAGCACAGCGGTGGTTCCGATAGACGATTTGTT CTCCACGGTAAAAGCTCCGACGTTCCAAGCAAGTCCGACTTTCACCATTCCGAATCAAGATATAATCGAATCCACCACGACTACAGCCACCGGAGATAAA AGGGCGATGGTTTTGGAGGACGACATGTTTTCCACATCGGCGGCGCTGCCGACGTTCAGCGTTCAGAGTCCGGGAAGAATCGAAACGGAATCATCAACGG CCACGATGGGAGACGACAAGGCAATAGTTCTAGTGGATTATTTGTTCTCGACGGGGACTATGGCAGCTCCGACGTTTCAGGCGAAACCGACGTTCAGCTC CCAGAGTAGTGGAGGTGGAGGAGGTGGAGGGATTGGTGAGGATCTTTTCGGGCCATGGCCGGCGGTGGAGACCACGGCGGAGGGTCGAGAGAAGCTGATG AGGGAACAACAGATGTGGTTGGAGAATCAAAACAGGATTATAGCGAAGAATTTGTGTTGA
AA sequence Show only first row Show all	>Lus10035340 pacid=23170670 polypeptide=Lus10035340 locus=Lus10035340.g ID=Lus10035340.BGIv1.0 annot-version=v1.0 MPSKLRKAIGAVKDQTSISFAKISSANTSASNLEVLILKATRHDDAPIDDRYVAEVLSLISSSKAYAGACALVISKRIGRTRNWIVALKSLLLVLRIFQD GDPYFPREVLHAMKRGARILNLSGFRDDSNSSPWDFTAFVRTFALYLDERLDCFITGKLQRRFTNRRRDSGGDPRNRRFRQPTKMYFTDNMKPPVLLDKI SFWQKLLDRVMATRPTGAAKSNRLVQICLYAVVQESFDLYRDISDGLALLLDSFFHLPYQSCATAFQACVKASKQFEELCSYYDFCKGMGVGRTSEYPSV QRISEELVETLQEFLKDQVSFPAHSQSPPQLRIAMDKSIDPEDAESQVIPHERQLSSLEDLMGLAGMCQDSSEQLDYNQDMISARDSASSSSLPSEQGPT STTMSAKSNSIDLLSLDDWDFEDSSEKGHEKTNSGWEIVLAEITTQPNQLSETEIPNNFFDSGFEFGNTQVPDQYQYNPFLQDLDIPLSQIESQSTKAAP VANGDEKSIFLVDDLFSLPSPALAVVAPTFQSIPTFSVQSPEINELGDWKLEQRTKSTAVVPIDDLFSTVKAPTFQASPTFTIPNQDIIESTTTTATGDK RAMVLEDDMFSTSAALPTFSVQSPGRIETESSTATMGDDKAIVLVDYLFSTGTMAAPTFQAKPTFSSQSSGGGGGGGIGEDLFGPWPAVETTAEGREKLM REQQMWLENQNRIIAKNLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	0	1
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	1.0	0.9693
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	1.7	0.8464
					Lus10038177 [exp]	10.1	0.7918
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	11.6	0.6933
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	14.4	0.8815
					Lus10003927 [exp]	16.6	0.7641
AT4G40070			RING/U-box superfamily protein...		Lus10035931 [exp]	19.8	0.8307
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10017639 [exp]	21.6	0.6726
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	21.8	0.8265
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	23.0	0.7666

Compare expression of checked genes

Lus10035340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.