Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05190 829 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G27410 822 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G65780 70 / 2e-12 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT3G49680 65 / 7e-11 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT3G19710 59 / 3e-09 BCAT4 branched-chain aminotransferase4 (.1) AT1G50090 58 / 8e-09 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50110 57 / 1e-08 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10070 55 / 7e-08 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G10060 55 / 7e-08 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029984 [exp] 1008 / 0 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10011567 [exp] 62 / 9e-10 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 61 / 2e-09 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 56 / 4e-08 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10011604 [exp] 54 / 3e-07 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10007246 [exp] 51 / 1e-06 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10028247 [exp] 44 / 0.0002 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007247 [exp] 44 / 0.0004 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039100 [exp] 861 / 0 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Potri.002G113600 [exp] 67 / 9e-12 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.007G008000 [exp] 64 / 1e-10 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082700 [exp] 62 / 5e-10 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 56 / 5e-08 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10035342 pacid=23170683 polypeptide=Lus10035342 locus=Lus10035342.g ID=Lus10035342.BGIv1.0 annot-version=v1.0 ATGGCCAGTGGCAAAGAAGATGGAGGTGAGGGTGCTATGGAGGTGATTCATTCATGGTCAGCGCCGAGATCTCTCAGCACCAGCCTCATGTACTCTTTTG CTCAGAGAGATGATTTTGAAGTGCTTGACGAACCTTTATACCCAAATTTCCTAAAAGCGACTGGTGTTGCACGGCCATACAGAGAACAGGTTCTATCCTC CATGGAAGCTGATGGGGATAAGGTTATAAAAGATGTAATCTACACCCCAGGAACAAAGAAGTACAGATACTGTAAGCATATCTCAAAGCAAAGGTTGCCT GGATTGCCCACTGATCTCATGAATAAAGGGAAGCACTTCATATTGATACGCAATCCTCTCGATATCTTGCCCTCCTTTGATAAAGTTGTGCCCCCGTCAT TTTTCGAGTTAGGTCTAGCGGAACTGGTCTCGATATACAGTGATCTCTGCCGATTGGGAACCCCTCCACCGGTTATTGATGCTGCAGAACTTGAGCAAGA CCCCGAGAGAACTCTGCGTGGTCTTTGTGAAGACTTGAGCATACCCTTCCAGAATTCAATGTTAAGCTGGAAAGCTGGTCCAAGACCATTTGATGGAGTT TGGGCTCCATGGTGGTACAAAAGTGTGCACGAGTCGACAAACTTCGCACCCGGGAGAAAGTATCCCAAGCCATTTCCCGTTGCCTTCTATGACTTGTTGG AACAAGCCCTACCTTTGTACAACGTGCTACGTCGCCATGTAAAATGTCCATCAAACCTTCTGAAGAGCCCATTACCTCCCCCGGATCTTCCAGTTCCTGA GAACGAGAAGCTCCTTGCATGGATTGGAGATGAGATCCTTCCCCGCGAGAGTGCCAAGGTTTCTGTGTTCGACTCGGTTGTTCAAGGAGGCGACTCGGTG TGGGAGGGACTGCGCGTTTATGATGGGAGAGTATTTAAGCTTGAGGAACATTTAGACAGAATGTTCGATTCAGCAAAGGCTCTTGCTTTCAGCAACGTTC CCAGTCGCGACGAGATCAAGGAGGCAATCTTCAGAACTCTAATAAGGAATGGAATGTTCAATAATGCACACATCCGGTTGTCTCTTACTCGGGGGAAGAA GGTTACTTCCGGGATGAGTCCTTTGTTCAATCTGTATGGATGTACATTGATCGGTAAATCCTATGACTTCTTCATGTCTCATGGTACCAATTACGAAGAT CGGATCTTTAAGGTTAACTCCTTTCCTTTTTGCCTGCCAGTGCTTGCTGAATGGAAACGCCCAGTTTATGACAATGCACATGGAATAACTCTTGTTACTG CCACCACTAGGCGTAACTCGCCAAATAATCTGGATTCAAAGATTCACCACAATAACCTTCTCAACAACATACTTGCCAAGATTGAAGGGAACAATGCCTC GGCTGATGATGCCATCATGCTTGACAAGGACGGTTATGTCTCCGAAACGAACGCTACAAATATCTTCTTGGTGAAGAAAGGTCGCGTCTTAACACCACAT GCCGATTACTGCCTCCCTGGCATCACCAGAGCTACTGTGATGGAACTTGTAGTCAAGGAGAGCATCGTGTTAGAAGAACGCAGGCTCAGCTTGTCAGAGT TCCACACTGCAGATGAGGTATGGACAACGGGAACAATGGGAGAGATCACCCCGGTCGTGAAGATCGATGGACGAGAAGTTGGTGATGGAGAAGTCGGGGA TGTTACAAAGAGGATCCAACAAGCTTACAAGAATCTTACACATGACTCTGGAGTCCCTATTCCCACCTACAAGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10035342 pacid=23170683 polypeptide=Lus10035342 locus=Lus10035342.g ID=Lus10035342.BGIv1.0 annot-version=v1.0 MASGKEDGGEGAMEVIHSWSAPRSLSTSLMYSFAQRDDFEVLDEPLYPNFLKATGVARPYREQVLSSMEADGDKVIKDVIYTPGTKKYRYCKHISKQRLP GLPTDLMNKGKHFILIRNPLDILPSFDKVVPPSFFELGLAELVSIYSDLCRLGTPPPVIDAAELEQDPERTLRGLCEDLSIPFQNSMLSWKAGPRPFDGV WAPWWYKSVHESTNFAPGRKYPKPFPVAFYDLLEQALPLYNVLRRHVKCPSNLLKSPLPPPDLPVPENEKLLAWIGDEILPRESAKVSVFDSVVQGGDSV WEGLRVYDGRVFKLEEHLDRMFDSAKALAFSNVPSRDEIKEAIFRTLIRNGMFNNAHIRLSLTRGKKVTSGMSPLFNLYGCTLIGKSYDFFMSHGTNYED RIFKVNSFPFCLPVLAEWKRPVYDNAHGITLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNASADDAIMLDKDGYVSETNATNIFLVKKGRVLTPH ADYCLPGITRATVMELVVKESIVLEERRLSLSEFHTADEVWTTGTMGEITPVVKIDGREVGDGEVGDVTKRIQQAYKNLTHDSGVPIPTYKES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	0	1
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	2.2	0.8504
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	2.4	0.8472
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Lus10007807 [exp]	4.5	0.8080
					Lus10012330 [exp]	9.2	0.8228
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	14.5	0.7752
					Lus10023198 [exp]	16.7	0.7283
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	19.4	0.7522
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	20.6	0.7850
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	22.8	0.7419
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	23.1	0.6880

Compare expression of checked genes

Lus10035342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.