Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63480 227 / 2e-71 ATP binding microtubule motor family protein (.1.2) AT3G12020 91 / 3e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G47820 89 / 1e-19 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55550 89 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 88 / 2e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 88 / 2e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 88 / 2e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 84 / 6e-18 ATP binding microtubule motor family protein (.1) AT4G39050 82 / 2e-17 Kinesin motor family protein (.1) AT3G23670 82 / 2e-17 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029983 [exp] 379 / 3e-129 AT3G63480 466 / 1e-160 ATP binding microtubule motor family protein (.1.2) Lus10017016 [exp] 93 / 5e-21 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 93 / 5e-21 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 89 / 2e-19 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 87 / 6e-19 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10012048 [exp] 86 / 1e-18 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10016589 [exp] 86 / 1e-18 AT3G20150 914 / 0.0 Kinesin motor family protein (.1) Lus10027934 [exp] 86 / 1e-18 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10014216 [exp] 86 / 2e-18 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038900 [exp] 237 / 3e-75 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G149000 [exp] 94 / 3e-21 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.002G235500 [exp] 92 / 1e-20 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.006G210700 [exp] 91 / 2e-20 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 89 / 6e-20 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G077800 [exp] 89 / 1e-19 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G360200 [exp] 87 / 4e-19 AT3G20150 804 / 0.0 Kinesin motor family protein (.1) Potri.006G194900 [exp] 87 / 5e-19 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 87 / 6e-19 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G161100 [exp] 86 / 7e-19 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10035343 pacid=23170501 polypeptide=Lus10035343 locus=Lus10035343.g ID=Lus10035343.BGIv1.0 annot-version=v1.0 ATGGAAGCTTCTCCTCCGCCGAAAAAGCAGGCGGCGAATGTGACGGTTTGTTCTCGGTTCAGGCCTTTGAGCTCAAAGGAAAGGAGAGATCACGGCGGCC GAGTCTGCGTGCGCCGCGTCGACGGCGAGAATTTCGTCCTTAAGGACGAGAAGGACGAGGACTTTACTTTCAGCTTCGACAGGGTCTTCTACGAGGATTC CCTGCAAGTTGATGTGTACGAGTTCCTCGCGTTGCCTATCGTCAAAGATGCTGTTAATGGAGTGAACGGGACAATTATCGCTTATGGACAGACGGGAGCT GGGAAGACGTACAGCATGGAGGGACCGGATGTTCTGCAATCAGACGATATGCAGAAAGGGCTACTTCCAAGGGTAGTGGATGGTTTGTTCGATCATATTG CGTCTGCTGGTGATTCAAGCAAGTATAAAATCAAGCTGTCTATGGTAGAGATATACATGGAGAGAGTCAGGTATACGTGCCTCATTGGTTTCATACTTCC ATTGGCTATGTTTACTCTTCGTTCCATAACTAAGTTTAGGACCAGATATGTTTATGTGAATACTACTGAAGTGATGGTGCTTACTTTACTCAGGGATCTA TTTGACTTGCCAAAAGACAATCTACTGATTAAGCAGAGTAAAGAGAATGGGATGCTGGTTTCTGGAGTGACAGAGGCAAGTGCACTTTTGACTTCAAGTA TCATTGCTAGAAAAGATTTAGCTTATTTTGGTGTCTGTCTGGTAGCAAGCTTGCTAAGAACGATTAATTTTTGCATTTACCTGAGTTTATTGGTTGATCC CATGGTTAAGAATTAA
AA sequence Show only first row Show all	>Lus10035343 pacid=23170501 polypeptide=Lus10035343 locus=Lus10035343.g ID=Lus10035343.BGIv1.0 annot-version=v1.0 MEASPPPKKQAANVTVCSRFRPLSSKERRDHGGRVCVRRVDGENFVLKDEKDEDFTFSFDRVFYEDSLQVDVYEFLALPIVKDAVNGVNGTIIAYGQTGA GKTYSMEGPDVLQSDDMQKGLLPRVVDGLFDHIASAGDSSKYKIKLSMVEIYMERVRYTCLIGFILPLAMFTLRSITKFRTRYVYVNTTEVMVLTLLRDL FDLPKDNLLIKQSKENGMLVSGVTEASALLTSSIIARKDLAYFGVCLVASLLRTINFCIYLSLLVDPMVKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	0	1
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	2.4	0.9784
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	3.9	0.9610
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	4.9	0.9674
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	5.5	0.9535
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	6.3	0.9483
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	7.5	0.9606
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	8.4	0.9522
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	9.2	0.9565
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	9.5	0.9409
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	11.5	0.9364

Compare expression of checked genes

Lus10035343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.