Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54780 387 / 1e-136 AtTLP18.3, TLP18.3 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029979 [exp] 521 / 0 AT1G54780 402 / 1e-142 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026400 [exp] 407 / 2e-144 AT1G54780 383 / 7e-135 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1) Potri.005G038700 [exp] 402 / 2e-142 AT1G54780 370 / 9e-130 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04536 [flax] [poplar] TPM_phosphatase TPM domain
Representative CDS sequence Show only first row Show all	>Lus10035346 pacid=23170490 polypeptide=Lus10035346 locus=Lus10035346.g ID=Lus10035346.BGIv1.0 annot-version=v1.0 ATGGAGACCTTACTTTCTTCTCGTTCCTTCTCCTCCCCTCTCTTCAACGCTAAACCTTCATTTTCAAGGCCTCATCTCCCAAAGATCATAGCTTGCAGCA CCAGCAGCTCCAAGAACCAAACTTTTCAGTCCCTGAAACCGTCTCTACCAACACCCAGAAGCTGGTTCCTCAATGCTCAGCAAGGGATAGCAGCTCTAGC TCTCTCTTTAGCGCTAAGCTTCACTCCAGTTACCCTCCACCACAATGCTCTGGCTTCCGAGTTCGACGTGATCAACGAAGGTCCGCCCAAGACTTCCTAC GTTGTGGACGATGCTGGGGTTTTGAGCAGGGTTACCAAGACTGATTTGAGGAATCTGTTGTCTGATTTGGAGTCAAGGAAGAATTTCAGGATCAATTTCA TCACTGTTAGGAAGCTCACTAGCAAAGCTGATGCTTTTGAGTATGCAGACCAACTGCTCGAGAAATGGTACCCAACGGTTGAGGAAGGGAACAATAAGGG GATTGTTGTGCTGGTGACCAGCCAAAAGGAAGGAGCTGTTACTGGAGGGCCTGCATTTGTGCAAGCTGTTGGTGAAACTGTTCTTGATGCTACCGTTTCT GAGAATCTTCCAGTCTTGGCTACGGACGAGAAGTACAATGAAGCGGTATTTAGCAGTGCCAAGAGGTTAGTGGCTGCCATTGATGGACTCCCAGACCCAG GTGGTCCAGCGTTGAAGGACGACAAGAGAGAATCCAACTTCAAAACCAAGGAGGAGACCGACGAGAAGCGAGGGCAATTCACTCTAGTGGTTGGAGGTCT CTTGGTGATTGCCTTTGTTGTTCCCATGGCTCAATACTATGCTTATGTTTCCAGGAAATAG
AA sequence Show only first row Show all	>Lus10035346 pacid=23170490 polypeptide=Lus10035346 locus=Lus10035346.g ID=Lus10035346.BGIv1.0 annot-version=v1.0 METLLSSRSFSSPLFNAKPSFSRPHLPKIIACSTSSSKNQTFQSLKPSLPTPRSWFLNAQQGIAALALSLALSFTPVTLHHNALASEFDVINEGPPKTSY VVDDAGVLSRVTKTDLRNLLSDLESRKNFRINFITVRKLTSKADAFEYADQLLEKWYPTVEEGNNKGIVVLVTSQKEGAVTGGPAFVQAVGETVLDATVS ENLPVLATDEKYNEAVFSSAKRLVAAIDGLPDPGGPALKDDKRESNFKTKEETDEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	0	1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	1.0	0.9908
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	1.4	0.9651
AT1G49380			cytochrome c biogenesis protei...		Lus10011311 [exp]	2.2	0.9555
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	2.8	0.9555
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	3.9	0.9563
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	4.6	0.9486
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	5.2	0.9449
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	5.5	0.9548
AT3G53470			unknown protein		Lus10014016 [exp]	5.8	0.9332
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10002095 [exp]	8.0	0.9332

Compare expression of checked genes

Lus10035346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.