Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27395 183 / 1e-56 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029978 [exp] 356 / 1e-124 AT5G27395 156 / 7e-46 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026700 [exp] 183 / 2e-56 AT5G27395 356 / 8e-124 Mitochondrial inner membrane translocase complex, subunit Tim44-related protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF04280 [flax] [poplar] Tim44 Tim44-like domain
Representative CDS sequence Show only first row Show all	>Lus10035347 pacid=23170482 polypeptide=Lus10035347 locus=Lus10035347.g ID=Lus10035347.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTTCGCCGCCAAATTCCAGCAATTCGCGCCCTCCTTTCCACCTTCGAGAATCGCCAATCTCTTCACTTGTTTGGAAGCTCTAGAAGCTATT ACGGTGGTATATCGCATGGTATTGGACTCAAATCCTACGGAGATTCGCAATGCTTTCGTAAGGTGAACAGTGATGTTCCTTGGATGCTCAGAAGTCAATT GACACTGCGATCTCCAATGGAAATGGAGGTACCGATTTACCGGAATGATAGGAGGATGTCTACAACCCAGGTGAAAGCCCCGCCACAATCACGGCAGATG ATAAACGTTCTGCTAGCACATGGCGATAAAACCACCATTCGTAAAGCAGTTACAGAGAAAATGTACTCCGAACTGAAGAATGAGATCAAGAATAGAGAAG CAAGGTGGAGTAAAATTTACTGGGAATTGGTTGAACCAGTTGTCAAGATACGAACCATGAGAGCCCGACTGGCACGTATATTTACTTACCCCTGTTTAGT AAAAATTGGCGTTGATCGAAGCGACCTTAACAAAGCTTTCATACAACTAACACTCGAGTTCTTGTCGAAACAGAAGTTTGAGGCTTATGATTCAAAAGGT GTTAAAATAGCTGGTAACAAAGACAAGGAGACTCTAAACCAAACCGGAGCAAATTATTCACCGCCTGAGCCCACTGACCCTACCACTGGATGGTTTTCGC AGGTCCTTGTTCGTGACCTTTGGGTATTTGAGAAATCCCTTTTCCACAAAGATGCTTTCTGGCGGCTCTGCGGGCGAATTTCACCCAAGTAG
AA sequence Show only first row Show all	>Lus10035347 pacid=23170482 polypeptide=Lus10035347 locus=Lus10035347.g ID=Lus10035347.BGIv1.0 annot-version=v1.0 MAALRRQIPAIRALLSTFENRQSLHLFGSSRSYYGGISHGIGLKSYGDSQCFRKVNSDVPWMLRSQLTLRSPMEMEVPIYRNDRRMSTTQVKAPPQSRQM INVLLAHGDKTTIRKAVTEKMYSELKNEIKNREARWSKIYWELVEPVVKIRTMRARLARIFTYPCLVKIGVDRSDLNKAFIQLTLEFLSKQKFEAYDSKG VKIAGNKDKETLNQTGANYSPPEPTDPTTGWFSQVLVRDLWVFEKSLFHKDAFWRLCGRISPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	0	1
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	1.0	0.8617
AT1G63810			unknown protein		Lus10026014 [exp]	17.6	0.8606
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	25.8	0.8453
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	30.7	0.8392
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	31.4	0.8386
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	34.6	0.7856
AT3G59670			unknown protein		Lus10008349 [exp]	34.6	0.8412
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	34.9	0.8019
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10014279 [exp]	37.7	0.7740
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	39.1	0.8377

Compare expression of checked genes

Lus10035347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.