Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27380 697 / 0 GSHB, GSH2 glutathione synthetase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029976 [exp] 1029 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026800 [exp] 734 / 0 AT5G27380 765 / 0.0 glutathione synthetase 2 (.1) Potri.005G038100 [exp] 728 / 0 AT5G27380 757 / 0.0 glutathione synthetase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0483 [flax] [poplar] PreATP-grasp PF03199 [flax] [poplar] GSH_synthase Eukaryotic glutathione synthase CL0483 [flax] [poplar] PreATP-grasp PF03917 [flax] [poplar] GSH_synth_ATP Eukaryotic glutathione synthase, ATP binding domain
Representative CDS sequence Show only first row Show all	>Lus10035348 pacid=23170582 polypeptide=Lus10035348 locus=Lus10035348.g ID=Lus10035348.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGCTGCTCTTCTTCTCTGAGCCTTTCTTTCCCTCCCACTACTCATGCTGTCCGTTGCCCTGCTGTCACTCCCCACTGTATATCATCATCAG CTCATTTGAATCCGACCTCAAATTACTTCCCCACAAATCAGCTCTTCTTCAAACACCTTTCTCGGTCCGATTCTACCCCAAAGGCTCCGACTTTGAACTG CGGCAGATTAACCCAGATGGCGACTCAAGGAGGAAGCGATTCCAAACCCTCGCTTGGTTTGCACAAAATTGACGAGAAGTTGGTCCAGGAGATGGTCTAT GATGCCCTTGTTTGGAGCTCTTTACATGGCCTTGTTGTTGGCGACAGAAGTGTTCAGGTTTTGCTGGCAAGATCAGGAACAGTACCTGGAGTAGGAATGG TGCATGCCCCAATTGCCTTGCTGCCAACTGCATTCCCAGAAAGTCAGTGGAAGCTAGCTTGTGAAGTGGCACCGATCTTCAATGAACTTGTGGATCGCGT GAGCTTGGATGGAAAGTTCTTACAGGAGTCACTGTCAAGAACAAAGAAAGTCGATGCTTTTACTTCAAGGCTTCTCGACATACATTCCAGGATGCTGGAG ACCAACAAGAAAGAGGACATACGTATGGGTTTGCATCGTTCGGATTACATGCTCGACGAAAAAACTAAGTGTTTGCTTCAAATAGAGTTGAACACGATAT CGACCTCGTTCCCTGGCCTTGGTTCACTTGTTAGTGAGCTTCACAGGAACTTGGTAAGGGATTATGGGAAACACCTTGGATGCGATTTCAACAGAGTACC AAGGAACGCCACTGCCAACCAGTTCTCCGAGGCATTGGCCAAAGCTTGGCTTGAATATAACAACCCCAAGTCTGTAATCATGGTTGTCGTTCAACCTGAC GAGCGTAACATAGGCGGCCAAGCAGTATCAGTCGTATACTTCAGAGCTGGGTATACACCAACTGATTATCCTTCCGAAGCAGAATGGAGAGCTAGGCTCC TCATGGAGCAATCATCAGCCGTTAAATGTCCTTCCATATCTTACCATTTGACAGGAACCAAGAAGATCCAGCAGGAACTCGCTAAGCCTAATGTGCTCGA GAGATTTCTCGATAACAAAGACGACATTGCCAAGCTTCGACAGTGCTTTGCTGGATTATGGAGTTTAGACGACTCGGAAATTGTCAACTCAGCTATCGGA AAGCCTCATCTTTTCGTGATGAAGCCCCAGAGAGAAGGCGGAGGGAACAATATCTATGGTGATGAAGTGAGGGAAAACCTACTTAGACTTCAAAAAGAAG GGAAAGAAGAAAAAGATGCTTACATCCTTATGCAGAGAATCTTTCCGACGGTTTCTGCTACATTCTTGGTCCGGGACGGAATCTGTCATAAAGACCATGC TATATCTGAACTAGGAATCTACGGTGCTTATCTGAGGAACAAGAATAAGGTTATCGTAAATGAGAAATCTGGATACTTGATGCGGACAAAGGTATCTTCT TCGAACGAAGGAGGAGTTGCAGCCGGGTTTGCTGTCCTGGACAGTATATACTTGACTTAA
AA sequence Show only first row Show all	>Lus10035348 pacid=23170582 polypeptide=Lus10035348 locus=Lus10035348.g ID=Lus10035348.BGIv1.0 annot-version=v1.0 MGVGCSSSLSLSFPPTTHAVRCPAVTPHCISSSAHLNPTSNYFPTNQLFFKHLSRSDSTPKAPTLNCGRLTQMATQGGSDSKPSLGLHKIDEKLVQEMVY DALVWSSLHGLVVGDRSVQVLLARSGTVPGVGMVHAPIALLPTAFPESQWKLACEVAPIFNELVDRVSLDGKFLQESLSRTKKVDAFTSRLLDIHSRMLE TNKKEDIRMGLHRSDYMLDEKTKCLLQIELNTISTSFPGLGSLVSELHRNLVRDYGKHLGCDFNRVPRNATANQFSEALAKAWLEYNNPKSVIMVVVQPD ERNIGGQAVSVVYFRAGYTPTDYPSEAEWRARLLMEQSSAVKCPSISYHLTGTKKIQQELAKPNVLERFLDNKDDIAKLRQCFAGLWSLDDSEIVNSAIG KPHLFVMKPQREGGGNNIYGDEVRENLLRLQKEGKEEKDAYILMQRIFPTVSATFLVRDGICHKDHAISELGIYGAYLRNKNKVIVNEKSGYLMRTKVSS SNEGGVAAGFAVLDSIYLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10035348 [exp]	0	1
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	6.1	0.9491
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	17.6	0.9476
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	18.8	0.9468
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	24.9	0.9435
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	25.0	0.9423
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	26.8	0.9429
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10006885 [exp]	31.5	0.8984
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	34.0	0.9355
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	34.1	0.9315
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	35.3	0.9391

Compare expression of checked genes

Lus10035348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.