Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32580 81 / 2e-19 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT4G30996 76 / 2e-17 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 76 / 3e-17 Protein of unknown function (DUF1068) (.1) AT1G05070 75 / 6e-17 Protein of unknown function (DUF1068) (.1) AT4G04360 43 / 3e-05 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029975 [exp] 272 / 3e-94 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10030034 [exp] 81 / 3e-19 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 80 / 1e-18 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 79 / 1e-18 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 79 / 1e-18 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10015556 [exp] 65 / 3e-13 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10020038 [exp] 55 / 2e-09 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026900 [exp] 119 / 3e-34 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 114 / 2e-32 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 78 / 3e-18 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.004G006500 [exp] 77 / 1e-17 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.006G187800 [exp] 76 / 3e-17 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.014G155600 [exp] 75 / 5e-17 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 71 / 2e-15 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10035349 pacid=23170465 polypeptide=Lus10035349 locus=Lus10035349.g ID=Lus10035349.BGIv1.0 annot-version=v1.0 ATGGCGTTTCCGTCGGAGCATTATGGAATTCGGAGCAGTAGCAACAATGGCGGCGGAGCTCTGAGAGTGAGCTTGGCGTTGACTGCTATTTTCCTGTTTG TGTATATAATCATGGCACCTCGTGGGAATTCCTCGAGTGTTCATCAAGATTCGTCGTCGTGTCAATGTGACTGCGATTGCGCTGATGCTGTCGATTCCCC GTTTTTGGACTTGCCAGCAGAGTCTATCAACGGCTCATATGCAGATTGCAGAACGAATGATCCGGAGATAAAAGAAGAAGTGGAGAAGGACAGACTAGCA TTGTTATCAGAGGAGATTGTCCTGCAGAAGCTAGTAGCTAACGAAACCCTGCAACGAACCAAATCCCTAACGACGGAGAGCGGAGTAGTCTATTCTCACT ACAAGAGGGAAGCAGAGAAGTGCATTGCACAGGTGGAAAATTGCGAGGAAGCTCGAGAAAGAGCCGAGGCTGAACTAAGGGAAGAACTCAAGATTACAGC TTCCTGGGAGCAACGAGCTCTCGAACTCGGATGGAGCAGCAAGAGAGTGCAGTGA
AA sequence Show only first row Show all	>Lus10035349 pacid=23170465 polypeptide=Lus10035349 locus=Lus10035349.g ID=Lus10035349.BGIv1.0 annot-version=v1.0 MAFPSEHYGIRSSSNNGGGALRVSLALTAIFLFVYIIMAPRGNSSSVHQDSSSCQCDCDCADAVDSPFLDLPAESINGSYADCRTNDPEIKEEVEKDRLA LLSEEIVLQKLVANETLQRTKSLTTESGVVYSHYKREAEKCIAQVENCEEARERAEAELREELKITASWEQRALELGWSSKRVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	0	1
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	1.0	0.8935
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	1.4	0.8808
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	3.5	0.8341
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	7.5	0.8145
AT5G08400			Protein of unknown function (D...		Lus10009625 [exp]	9.2	0.8237
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	9.5	0.8208
					Lus10035524 [exp]	13.6	0.8174
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	15.7	0.8254
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	17.3	0.8279
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005443 [exp]	18.7	0.7882

Compare expression of checked genes

Lus10035349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.