Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 293 / 3e-99 Phosphoglycerate mutase family protein (.1) AT1G08940 282 / 2e-95 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029974 [exp] 432 / 4e-154 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1) Lus10015164 [exp] 358 / 4e-125 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1) Lus10031518 [exp] 358 / 7e-125 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1) Lus10032291 [exp] 163 / 3e-49 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10024659 [exp] 163 / 3e-49 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037900 [exp] 315 / 6e-108 AT3G05170 441 / 2e-157 Phosphoglycerate mutase family protein (.1) Potri.003G131200 [exp] 203 / 9e-64 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10035350 pacid=23170653 polypeptide=Lus10035350 locus=Lus10035350.g ID=Lus10035350.BGIv1.0 annot-version=v1.0 ATGGCGGATCCGGAGCATAACGGCCGCCGCAATCACAGTCTACCGAAGCGGATTATCCTGGTCCGGCACGGCGAGTCACAGGGGAACCTTGACGCGGCGG CGTACACCCACACGCCCGACCATAAAATCCCGCTTACTGGATGGGGTCGGGCTCAGGCGAGGGAGGCGGGCACCAAATTGCACTCTTTGTTTTCATTCCC TGACTGTGGCAACTCTTTGTACACTTGGAGAGCGTACTTCTACGTCTCACCTTACGACTGGACTCGGTCCACGCTTAGGGAGATCGGGAAGGCGTTCGAT AGGGAGATGATTATCGGGGTTAGGGAGGAGTGTAGGGTGAGGGAGCAGGATTTCGGGAACTTCCAGGTGGAAGAGAGGATGAAGGTTGTTAAAGAGTCGA GGGCCAGGTTCGGGAGGTTCTTCTTCCGGTTCCCTGATGGCGAATCTGCTGCTGATGTCTTCGATCGGGTTTCCAGTACGTTTCTCATGAAGTGGTTCAA GTGGACAGTTGAGCAGTCCGAGCTGCTGAGCAACCCCAAAAACTGCGAGTTCCGTGTGATGCAGTTGGGGTCCGGTGGAGAATACAGCTTGGCAGTCCAC CACACTGAAGAAGAACTCCGAGAATGGGGGCTTTCGGAAACCATGATTGCAGACCAGAAGCGGCGAGCCACAGCCAACAAGGGCGATTGGAACGACAGCT GTCCATGGGTTCTCGATGAATTCTTCGATCCACCACACGGATCAAGATTGAAGAGAAAGGGATTGTTGCAGTTCATTGTGAATGTCATTGTAACTAGCCG AACAGCTCTCGAATCATCGTGGATAGTAGCAATTGGTCGAGTTGATTGA
AA sequence Show only first row Show all	>Lus10035350 pacid=23170653 polypeptide=Lus10035350 locus=Lus10035350.g ID=Lus10035350.BGIv1.0 annot-version=v1.0 MADPEHNGRRNHSLPKRIILVRHGESQGNLDAAAYTHTPDHKIPLTGWGRAQAREAGTKLHSLFSFPDCGNSLYTWRAYFYVSPYDWTRSTLREIGKAFD REMIIGVREECRVREQDFGNFQVEERMKVVKESRARFGRFFFRFPDGESAADVFDRVSSTFLMKWFKWTVEQSELLSNPKNCEFRVMQLGSGGEYSLAVH HTEEELREWGLSETMIADQKRRATANKGDWNDSCPWVLDEFFDPPHGSRLKRKGLLQFIVNVIVTSRTALESSWIVAIGRVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	0	1
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	3.9	0.7843
AT5G24000			Protein of unknown function (D...		Lus10039272 [exp]	4.2	0.7829
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	13.6	0.7832
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	13.7	0.7824
AT1G70100			unknown protein		Lus10010725 [exp]	15.3	0.7745
AT2G40860			protein kinase family protein ...		Lus10024474 [exp]	15.4	0.7220
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	16.7	0.7517
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015014 [exp]	17.7	0.7374
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	25.0	0.7328
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	25.1	0.7407

Compare expression of checked genes

Lus10035350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.