Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 760 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029973 [exp] 1081 / 0 AT2G48060 614 / 0.0 unknown protein Lus10027982 [exp] 613 / 0 AT2G48060 1580 / 0.0 unknown protein Lus10008175 [exp] 454 / 3e-139 AT2G48060 1855 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037700 [exp] 959 / 0 AT2G48060 2623 / 0.0 unknown protein Potri.014G137200 [exp] 883 / 0 AT2G48060 3339 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035351 pacid=23170481 polypeptide=Lus10035351 locus=Lus10035351.g ID=Lus10035351.BGIv1.0 annot-version=v1.0 ATGGGGAGATTCCTCACTGGATTTTTATTGCCTATGCTGCTTCTTTCAGCTGCTTTGCTCAATTGGAGCTTACTGTCTCTAGTGGATTTGCTGGGATTTC TCTTCATTCAGTACACTGCACCGAAAATTGGTTTAAGATCGAGAAGGCGATTGCTGATCTCGTGGTACACCCTTTTGTTTTCCTCAGTAGCTATTGCTTC ACTCGCCATTTTTCATATTGTATGGGCTATTAAGGGGAATCAGTGGAGTACTGTTGATGCACAGTGGGCTAAGTTGATAGGTTTTCTAAGTATTCATTCA CAAAGGTTTCCGTATATGGTATATATCGTGATCGTCCAAGTCCTTGCAGCAGCGATTTCTGTGGTTGAATTATATGGTTGTAGGTTTTCTCGAGATTCGT TTATGGGAATTCAGTACTCGTCCATTCTGCACATAGGTTCTCATCTTCGAGTTTTGTGCTGCTTACTGTTGCCAGTTGTACAGCTGATCGTCGGCATTAG CCACCCTTCTTGGGCATCTTTACCATTTTTCATATTTAGCAGCATTGGGCTTGTTAATTGGTCTCTAACAAGCAATTTCCTTGGTTTGTTTCGGTGGTGG AGCTATCTTTTGTTCTATGCAGGGCTGAACATTATCCTATTGTATATCTTTCAACTTCCTGTTCGGTTTCCGTGGATGCACTCTGCCGGTAGTTTCATTG GTCTCTATAAAGTATCTTCATGCTCGGAGTGGTCTGAAGTTTGTTCTGGTTTCTCACTTCTTCTCTTCTATATTATGCTATCTTGGATCAGATGTGACCT CGCAGAAATGGATTTTATAATGTCTGGTAGAGAGAACAGCTTGACTGTACAACTGCTCACGCCAAAGCATTCATTTCTTATTCGACAATCTCGATCTGGT GTAAGGCATACCAACTTTTTGTTAAGAGGAGTAGTTTTCCGCACATTCTGTGTGAACTTTTTCACTTACGGTTTCCCGATTTCCTTGCTTGCTTTGTCAT TTTGGAGTTTCCATTTTGCAAGTTTCTGTGCATTTGCACTCCTGGCATACGTTGGCTATGTGCTCTACGCCATCCCTTCGGTTTTTCGGTTGCACCGGCT AAATGGCTTGCTCCTTGTATTCATTCTGTTGTGGGCTGCTAGCACTTATGTCTTCAACTTGACATTTCTGATCCTCAATAAGCATAGGGACCTGGAAATC TGGGAAACTATTGGTTTATGGCATTATCCTATCCCTGGGTTCTATCTGTTTGCGCAATTTTGTCTCGGTATTCTGGTTGCTTTAGGCAACCTCGTTAATA ACTCTGTTTTCCAGTACTTGTCTGATTTGGGTGTACAGTACTCGAAGCATGACGCCAATGTAGAAGATAGAGATGAGACTAAAGTACTAGTTATAGCAAC CGTGGCATGGGGGCTACGTAAAATGTCTCGAGCTATAGTCTTAGTCTTGATATTTCTCATAGCACTGAGACCTGGTCTCATTCATTCCTTATATATGGTT TTCTTTATGATATATCTCCTGAGCCGCACCATAAGTAGGAAGATGCGCCAGTATCTGATCCTTCTGTGTGAAGCACATTTCGCACTGACGTATTTTCTTC AACTTAACCTCATCTCAAATGCCTTGAAAGAGAAGGAAACGATAGCTACGGTTATCCTCGGAGAATTAGGTTTCCTCAGCAGTGCTGATTCTCGGGATTT CCTAAAGATAGGAACACTTGCATGCTTTTGTGCTCTTCATAACCATGGATTTGAAGTGCTGTCTGCATTTTCAGCCATTGTACAGCATACTCCCTGCCCT CCAATCGGCTTTGGCATCTTAAGAGCTGGTCTGGTTAAGTCGATTCTCTTGTATGTGTATACATCAAGGTCCAAACGGAACAGTGATAACAACTCTTCTC ATGAAAAGGAGATAGCATCTTATCTGACAGCAATAGGGCAGAACTTTCGGTCTGTGTATCGCTCATGCGGAACCTACATTGCTCTTTTAACAGTTCTTCT TGCTGTCTACCGGGTTAGACCCAATCATACTTCATTTGGTTACCTTTTCTTCCTTATGGTCTGGATGGTTACAAGGCAACATGCAGGAAGGACGACGAGG CTGATGTGGTTACCGTTGAAAGTTTATGCCATCTTCGTGTTTATTCTACTTTACGGTTTGAGTGTTTTCTTCAGCTTTCGGAAATGGTTATCAAGGATAG TTGATGTCTCTTATGTCTTTGGATATGACCCCAAGGCTTCGATGCTGGAAAATATATGGGAATCTCTTGCTGTGTTGGCAGTGATGCAATTGTATAGCTA CGAGAGGCAAAGCAAACGTAAGGCCAATATTCCAGAAACAAGTTCCTTTTCTCTGATCAAGCGCCTTCTCATTTGGCACGGGGAGAAAATACTTAACCTA TCGCTGTTTTATGCTTCGATATCCCCTATAAGTGGATTTGGTTTCCTCTTATCTCATCGGCATGGTTGCTTGTTCAACGTTACCCAAGTCGTCTTGGCTC CCATCCAAGTTGTCTGA
AA sequence Show only first row Show all	>Lus10035351 pacid=23170481 polypeptide=Lus10035351 locus=Lus10035351.g ID=Lus10035351.BGIv1.0 annot-version=v1.0 MGRFLTGFLLPMLLLSAALLNWSLLSLVDLLGFLFIQYTAPKIGLRSRRRLLISWYTLLFSSVAIASLAIFHIVWAIKGNQWSTVDAQWAKLIGFLSIHS QRFPYMVYIVIVQVLAAAISVVELYGCRFSRDSFMGIQYSSILHIGSHLRVLCCLLLPVVQLIVGISHPSWASLPFFIFSSIGLVNWSLTSNFLGLFRWW SYLLFYAGLNIILLYIFQLPVRFPWMHSAGSFIGLYKVSSCSEWSEVCSGFSLLLFYIMLSWIRCDLAEMDFIMSGRENSLTVQLLTPKHSFLIRQSRSG VRHTNFLLRGVVFRTFCVNFFTYGFPISLLALSFWSFHFASFCAFALLAYVGYVLYAIPSVFRLHRLNGLLLVFILLWAASTYVFNLTFLILNKHRDLEI WETIGLWHYPIPGFYLFAQFCLGILVALGNLVNNSVFQYLSDLGVQYSKHDANVEDRDETKVLVIATVAWGLRKMSRAIVLVLIFLIALRPGLIHSLYMV FFMIYLLSRTISRKMRQYLILLCEAHFALTYFLQLNLISNALKEKETIATVILGELGFLSSADSRDFLKIGTLACFCALHNHGFEVLSAFSAIVQHTPCP PIGFGILRAGLVKSILLYVYTSRSKRNSDNNSSHEKEIASYLTAIGQNFRSVYRSCGTYIALLTVLLAVYRVRPNHTSFGYLFFLMVWMVTRQHAGRTTR LMWLPLKVYAIFVFILLYGLSVFFSFRKWLSRIVDVSYVFGYDPKASMLENIWESLAVLAVMQLYSYERQSKRKANIPETSSFSLIKRLLIWHGEKILNL SLFYASISPISGFGFLLSHRHGCLFNVTQVVLAPIQVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10035351 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011315 [exp]	6.3	0.6661
AT2G48060			unknown protein		Lus10029973 [exp]	9.6	0.6948
AT2G04865			Aminotransferase-like, plant m...		Lus10032799 [exp]	13.6	0.6465
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005368 [exp]	16.0	0.6343
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	29.2	0.6292
					Lus10022112 [exp]	36.7	0.5764
AT3G63380			ATPase E1-E2 type family prote...		Lus10004087 [exp]	39.2	0.6264
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10001065 [exp]	44.7	0.5873
					Lus10017053 [exp]	49.0	0.4857
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	49.8	0.5828

Compare expression of checked genes

Lus10035351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.